Merge branch 'release_25.1' into dev

This commit is contained in:
mvdbeek
2026-01-20 19:45:11 +01:00
3 changed files with 60 additions and 1 deletions
@@ -199,7 +199,7 @@ proto-plus==1.27.0
protobuf==6.33.4
prov==1.5.1
psutil==7.2.1
pulsar-galaxy-lib==0.15.13
pulsar-galaxy-lib==0.15.14
py-key-value-aio==0.3.0
py-key-value-shared==0.3.0
pyasn1==0.6.2
@@ -0,0 +1,23 @@
runners:
local:
load: galaxy.jobs.runners.local:LocalJobRunner
pulsar_embed:
load: galaxy.jobs.runners.pulsar:PulsarEmbeddedJobRunner
pulsar_app_config:
tool_dependency_dir: none
conda_auto_init: false
conda_auto_install: false
execution:
default: pulsar_embed
environments:
local:
runner: local
pulsar_embed:
runner: pulsar_embed
remote_metadata: true
default_file_action: none
tools:
- class: local
environment: local
@@ -0,0 +1,36 @@
"""Integration tests for the Pulsar embedded runner with default_file_action: none.
This tests the configuration where Pulsar and Galaxy share a filesystem and
no file staging is needed (default_file_action: none).
See https://github.com/galaxyproject/galaxy/issues/21566
"""
import os
from galaxy_test.driver import integration_util
SCRIPT_DIRECTORY = os.path.abspath(os.path.dirname(__file__))
EMBEDDED_PULSAR_JOB_CONFIG_FILE = os.path.join(SCRIPT_DIRECTORY, "embedded_pulsar_none_job_conf.yml")
class EmbeddedNonePulsarIntegrationInstance(integration_util.IntegrationInstance):
"""Describe a Galaxy test instance with embedded pulsar configured with default_file_action: none."""
framework_tool_and_types = True
@classmethod
def handle_galaxy_config_kwds(cls, config):
config["job_config_file"] = EMBEDDED_PULSAR_JOB_CONFIG_FILE
config["object_store_store_by"] = "uuid"
config["retry_metadata_internally"] = False
instance = integration_util.integration_module_instance(EmbeddedNonePulsarIntegrationInstance)
test_tools = integration_util.integration_tool_runner(
[
"simple_constructs",
"job_properties",
]
)