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Merge branch 'release_25.1' into dev
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@@ -199,7 +199,7 @@ proto-plus==1.27.0
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protobuf==6.33.4
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prov==1.5.1
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psutil==7.2.1
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pulsar-galaxy-lib==0.15.13
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pulsar-galaxy-lib==0.15.14
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py-key-value-aio==0.3.0
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py-key-value-shared==0.3.0
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pyasn1==0.6.2
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@@ -0,0 +1,23 @@
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runners:
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local:
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load: galaxy.jobs.runners.local:LocalJobRunner
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pulsar_embed:
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load: galaxy.jobs.runners.pulsar:PulsarEmbeddedJobRunner
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pulsar_app_config:
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tool_dependency_dir: none
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conda_auto_init: false
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conda_auto_install: false
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execution:
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default: pulsar_embed
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environments:
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local:
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runner: local
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pulsar_embed:
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runner: pulsar_embed
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remote_metadata: true
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default_file_action: none
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tools:
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- class: local
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environment: local
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@@ -0,0 +1,36 @@
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"""Integration tests for the Pulsar embedded runner with default_file_action: none.
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This tests the configuration where Pulsar and Galaxy share a filesystem and
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no file staging is needed (default_file_action: none).
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See https://github.com/galaxyproject/galaxy/issues/21566
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"""
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import os
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from galaxy_test.driver import integration_util
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SCRIPT_DIRECTORY = os.path.abspath(os.path.dirname(__file__))
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EMBEDDED_PULSAR_JOB_CONFIG_FILE = os.path.join(SCRIPT_DIRECTORY, "embedded_pulsar_none_job_conf.yml")
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class EmbeddedNonePulsarIntegrationInstance(integration_util.IntegrationInstance):
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"""Describe a Galaxy test instance with embedded pulsar configured with default_file_action: none."""
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framework_tool_and_types = True
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@classmethod
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def handle_galaxy_config_kwds(cls, config):
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config["job_config_file"] = EMBEDDED_PULSAR_JOB_CONFIG_FILE
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config["object_store_store_by"] = "uuid"
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config["retry_metadata_internally"] = False
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instance = integration_util.integration_module_instance(EmbeddedNonePulsarIntegrationInstance)
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test_tools = integration_util.integration_tool_runner(
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[
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"simple_constructs",
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"job_properties",
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]
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)
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