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Merged in dan/galaxy-central-prs (pull request #643)

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Add ZebrafishMine Data Source Tool.
This commit is contained in:
Dannon Baker
2015-02-02 12:04:23 -05:00
parent f28120274d 538c07cc49
commit 04bd3c77c1
3 changed files with 22 additions and 0 deletions
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config/tool_conf.xml.main
+1
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@@ -15,6 +15,7 @@
<tool file="data_source/yeastmine.xml" />
<tool file="data_source/worm_modencode.xml" />
<tool file="data_source/wormbase.xml" />
<tool file="data_source/zebrafishmine.xml" />
<tool file="data_source/eupathdb.xml" />
<tool file="genomespace/genomespace_file_browser_prod.xml" />
<tool file="genomespace/genomespace_importer.xml" />
config/tool_conf.xml.sample
+1
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@@ -22,6 +22,7 @@
<tool file="data_source/worm_modencode.xml" />
<tool file="data_source/wormbase.xml" />
<tool file="data_source/wormbase_test.xml" />
<tool file="data_source/zebrafishmine.xml" />
<tool file="data_source/eupathdb.xml" />
<tool file="data_source/hbvar.xml" />
<tool file="genomespace/genomespace_file_browser_prod.xml" />
tools/data_source/zebrafishmine.xml
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@@ -0,0 +1,20 @@
<?xml version="1.0"?>
<tool name="ZebrafishMine" id="zebrafishmine" tool_type="data_source">
<description>server</description>
<command interpreter="python">data_source.py $output $__app__.config.output_size_limit</command>
<inputs action="http://zebrafishmine.org/begin.do" check_values="false" method="get">
<display>go to ZebrafishMine server $GALAXY_URL</display>
</inputs>
<request_param_translation>
<request_param galaxy_name="data_type" remote_name="data_type" missing="auto" >
<value_translation>
<value galaxy_value="auto" remote_value="txt" /> <!-- make txt auto detect -->
</value_translation>
</request_param>
</request_param_translation>
<uihints minwidth="800"/>
<outputs>
<data name="output" format="txt" />
</outputs>
<options sanitize="False"/>
</tool>