Typing checking for galaxy-job-execution.

lib/galaxy/job_execution/ports/view.py

@@ -1,10 +1,10 @@
 import logging
 
 from galaxy import (
-    exceptions,
     model,
     util
 )
+from galaxy.exceptions import ItemAccessibilityException, ObjectAttributeMissingException
 
 log = logging.getLogger(__name__)
 
@@ -26,19 +26,19 @@ class JobPortsView:
         key = "job_key"
         if key not in kwargs:
             error_message = "Job files action requires a valid '%s'." % key
-            raise exceptions.ObjectAttributeMissingException(error_message)
+            raise ObjectAttributeMissingException(error_message)
 
         job_id = self._security.decode_id(encoded_job_id)
         job_key = self._security.encode_id(job_id, kind="jobs_files")
         if not util.safe_str_cmp(kwargs["job_key"], job_key):
-            raise exceptions.ItemAccessibilityException("Invalid job_key supplied.")
+            raise ItemAccessibilityException("Invalid job_key supplied.")
 
         # Verify job is active. Don't update the contents of complete jobs.
         sa_session = self._app.model.context.current
         job = sa_session.query(model.Job).get(job_id)
         if not job.running:
             error_message = "Attempting to read or modify the files of a job that has already completed."
-            raise exceptions.ItemAccessibilityException(error_message)
+            raise ItemAccessibilityException(error_message)
         return job
 
     @property

packages/job_execution/galaxy/__init__.py

@@ -1 +1 @@
-__path__ = __import__('pkgutil').extend_path(__path__, __name__)
+__path__ = __import__('pkgutil').extend_path(__path__, __name__)  # type: ignore

packages/test.sh

@@ -34,7 +34,7 @@ PACKAGE_DIRS=(
 # tool_util not yet working 100%,
 # data has many problems quota, tool shed install database, etc..
 RUN_TESTS=(1 1 1 1 1 1 1 1 1 1 0 0)
-RUN_MYPY=(1 1 1 1 1 1 0 0 0 0 0 0)
+RUN_MYPY=(1 1 1 1 1 1 1 0 0 0 0 0)
 for ((i=0; i<${#PACKAGE_DIRS[@]}; i++)); do
     package_dir=${PACKAGE_DIRS[$i]}
     run_tests=${RUN_TESTS[$i]}