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Guruprasad Anada
2007-02-13 17:01:13 +00:00
parent 0ef3bdbba0
commit 02a60145bf
1 changed files with 28 additions and 0 deletions
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tools/stats/kaks.xml
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@@ -25,6 +25,34 @@
- This tool finds the ratio of the number of nonsynonymous substitutions per nonsynonymous site (Ka) to the number of synonymous substitutions per synonymous site (Ks) for the alignments in the input file.
-----
**Syntax**
- The input file should contain the aligned sequences in FASTA format
>Seq 1_a
AAAAAAAAAAAGGGGGGGG
>Seq 1_b
AAAAAAGGGGGGGGGGGGG
>Seq 2_a
TTTTTTTTTTCCCCCC
>Seq2_b
TTTT-----CCCCCAT
- The output will have the Ka/Ks value written above each pair of the aligned sequences.
Ka/Ks : 0.14
>Seq 1_a
AAAAAAAAAAAGGGGGGGG
>Seq 1_b
AAAAAAGGGGGGGGGGGGG
Ka/Ks : 0.06
>Seq 2_a
TTTTTTTTTTCCCCCC
>Seq2_b
TTTT-----CCCCCAT
</help>