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nmrML data type.

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This commit is contained in:
Pierrick Roger
2018-10-22 11:07:33 +02:00
parent 99bc4b33d2
commit 016a7935a3
2 changed files with 7 additions and 0 deletions
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config/datatypes_conf.xml.sample
+1
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@@ -214,6 +214,7 @@
<datatype extension="tandem" type="galaxy.datatypes.proteomics:TandemXML" mimetype="application/xml" display_in_upload="true"/>
<datatype extension="thermo.raw" type="galaxy.datatypes.proteomics:ThermoRAW" mimetype="application/octet-stream" display_in_upload="true"/>
<datatype extension="mzml" type="galaxy.datatypes.proteomics:MzML" mimetype="application/xml" display_in_upload="true"/>
<datatype extension="nmrml" type="galaxy.datatypes.proteomics:NmrML" mimetype="application/xml" display_in_upload="true" description="nmrML is an open mark-up language for NMR data." description_url="http://nmrml.org/schema/"/>
<datatype extension="mgf" type="galaxy.datatypes.proteomics:Mgf" display_in_upload="true"/>
<datatype extension="wiff" type="galaxy.datatypes.proteomics:Wiff" display_in_upload="true"/>
<datatype extension="mzxml" type="galaxy.datatypes.proteomics:MzXML" mimetype="application/xml" display_in_upload="true"/>
lib/galaxy/datatypes/proteomics.py
+6
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@@ -134,6 +134,12 @@ class MzML(ProteomicsXml):
blurb = 'mzML Mass Spectrometry data'
root = "(mzML|indexedmzML)"
class NmrML(ProteomicsXml):
"""nmrML data"""
# No edam format number yet.
file_ext = "nmrml"
blurb = 'nmrML NMR data'
root = "nmrML"
class ProtXML(ProteomicsXml):
"""protXML data"""