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Bump cwltest requirement and fix import

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Fixes:

```
mypy .
galaxy_test/base/populators.py:2258: error: "Module cwltest.utils" does not
explicitly export attribute "compare"  [attr-defined]
                    cwltest.utils.compare(value, actual_output)
                    ^~~~~~~~~~~~~~~~~~~~~
Found 1 error in 1 file (checked 20 source files)
make: *** [Makefile:96: mypy] Error 1
```
This commit is contained in:
mvdbeek
2023-01-09 15:21:41 +01:00
parent 8249b43052
commit 000473d89d
3 changed files with 4 additions and 4 deletions
Download Patch File Download Diff File Expand all files Collapse all files
lib/galaxy/dependencies/dev-requirements.txt
+1 -1
View File
@@ -25,7 +25,7 @@ codespell==2.2.2 ; python_version >= "3.7" and python_version < "3.11"
colorama==0.4.6 ; python_version >= "3.7" and python_version < "3.11" and sys_platform == "win32" or python_version >= "3.7" and python_version < "3.11" and platform_system == "Windows"
commonmark==0.9.1 ; python_version >= "3.7" and python_version < "3.11"
coverage[toml]==7.0.1 ; python_version >= "3.7" and python_version < "3.11"
cwltest==2.2.20210901154959 ; python_version >= "3.7" and python_version < "3.11"
cwltest==2.3.20230108193615 ; python_version >= "3.7" and python_version < "3.11"
cycler==0.11.0 ; python_version >= "3.7" and python_version < "3.11"
darker==1.6.1 ; python_version >= "3.7" and python_version < "3.11"
defusedxml==0.7.1 ; python_version >= "3.7" and python_version < "3.11"
lib/galaxy_test/base/populators.py
+2 -2
View File
@@ -67,7 +67,7 @@ from typing import (
)
from uuid import UUID
import cwltest.utils
import cwltest.compare
import requests
import yaml
from bioblend.galaxy import GalaxyClient
@@ -2241,7 +2241,7 @@ class CwlPopulator:
try:
for key, value in expected_outputs.items():
actual_output = run.get_output_as_object(key)
cwltest.utils.compare(value, actual_output)
cwltest.compare.compare(value, actual_output)
except Exception:
self.dataset_populator._summarize_history(run.history_id)
raise
pyproject.toml
+1 -1
View File
@@ -116,7 +116,7 @@ zipstream-new = "*"
ase = ">=3.18.1"
black = "^22.1.0"
codespell = "*"
cwltest = "2.2.20210901154959"
cwltest = "2.3.20230108193615"
darker = "*"
fluent-logger = "*"
httpx = "*"