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John MacFarlane
e0984a43a9
This deprecates the use of the external pandoc-citeproc
filter; citation processing is now built in to pandoc.
* Add dependency on citeproc library.
* Add Text.Pandoc.Citeproc module (and some associated unexported
modules under Text.Pandoc.Citeproc). Exports `processCitations`.
[API change]
* Add data files needed for Text.Pandoc.Citeproc: default.csl
in the data directory, and a citeproc directory that is just
used at compile-time. Note that we've added file-embed as a mandatory
rather than a conditional depedency, because of the biblatex
localization files. We might eventually want to use readDataFile
for this, but it would take some code reorganization.
* Text.Pandoc.Loging: Add `CiteprocWarning` to `LogMessage` and use it
in `processCitations`. [API change]
* Add tests from the pandoc-citeproc package as command tests (including
some tests pandoc-citeproc did not pass).
* Remove instructions for building pandoc-citeproc from CI and
release binary build instructions. We will no longer distribute
pandoc-citeproc.
* Markdown reader: tweak abbreviation support. Don't insert a
nonbreaking space after a potential abbreviation if it comes right before
a note or citation. This messes up several things, including citeproc's
moving of note citations.
* Add `csljson` as and input and output format. This allows pandoc
to convert between `csljson` and other bibliography formats,
and to generate formatted versions of CSL JSON bibliographies.
* Add module Text.Pandoc.Writers.CslJson, exporting `writeCslJson`. [API
change]
* Add module Text.Pandoc.Readers.CslJson, exporting `readCslJson`. [API
change]
* Added `bibtex`, `biblatex` as input formats. This allows pandoc
to convert between BibLaTeX and BibTeX and other bibliography formats,
and to generated formatted versions of BibTeX/BibLaTeX bibliographies.
* Add module Text.Pandoc.Readers.BibTeX, exporting `readBibTeX` and
`readBibLaTeX`. [API change]
* Make "standalone" implicit if output format is a bibliography format.
This is needed because pandoc readers for bibliography formats put
the bibliographic information in the `references` field of metadata;
and unless standalone is specified, metadata gets ignored.
(TODO: This needs improvement. We should trigger standalone for the
reader when the input format is bibliographic, and for the writer
when the output format is markdown.)
* Carry over `citationNoteNum` to `citationNoteNumber`. This was just
ignored in pandoc-citeproc.
* Text.Pandoc.Filter: Add `CiteprocFilter` constructor to Filter.
[API change] This runs the processCitations transformation.
We need to treat it like a filter so it can be placed
in the sequence of filter runs (after some, before others).
In FromYAML, this is parsed from `citeproc` or `{type: citeproc}`,
so this special filter may be specified either way in a defaults file
(or by `citeproc: true`, though this gives no control of positioning
relative to other filters). TODO: we need to add something to the
manual section on defaults files for this.
* Add deprecation warning if `upandoc-citeproc` filter is used.
* Add `--citeproc/-C` option to trigger citation processing.
This behaves like a filter and will be positioned
relative to filters as they appear on the command line.
* Rewrote the manual on citatations, adding a dedicated Citations
section which also includes some information formerly found in
the pandoc-citeproc man page.
* Look for CSL styles in the `csl` subdirectory of the pandoc user data
directory. This changes the old pandoc-citeproc behavior, which looked
in `~/.csl`. Users can simply symlink `~/.csl` to the `csl`
subdirectory of their pandoc user data directory if they want
the old behavior.
* Add support for CSL bibliography entry formatting to LaTeX, HTML,
Ms writers. Added CSL-related CSS to styles.html.
209 lines
9.7 KiB
XML
209 lines
9.7 KiB
XML
<?xml version="1.0" encoding="utf-8"?>
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<style xmlns="http://purl.org/net/xbiblio/csl" class="in-text" version="1.0" default-locale="en-US">
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<info>
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<title>Journal Article Tag Suite</title>
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<title-short>JATS</title-short>
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<id>http://www.zotero.org/styles/journal-article-tag-suite</id>
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<link href="https://github.com/MartinPaulEve/JATS-CSL/blob/master/jats.csl" rel="self"/>
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<link rel="documentation" href="http://jats.nlm.nih.gov/archiving/tag-library/1.0/index.html"/>
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<author>
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<name>Martin Paul Eve</name>
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<email>martin@martineve.com</email>
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</author>
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<category citation-format="numeric"/>
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<category field="medicine"/>
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<category field="biology"/>
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<summary>Use this style to generate bibliographic data in Journal Article Tagging Suite (JATS) 1.0 XML format</summary>
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<updated>2014-06-21T17:41:26+00:00</updated>
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<rights license="http://creativecommons.org/licenses/by-sa/3.0/">This work is licensed under a Creative Commons Attribution-ShareAlike 3.0 License. Originally by Martin Fenner.</rights>
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</info>
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<locale xml:lang="en">
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<terms>
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<term name="et-al">{{jats}}<etal/>{{/jats}}</term>
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</terms>
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</locale>
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<macro name="citation-number">
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<text variable="citation-number" prefix="{{jats}}id="ref-{{/jats}}" suffix="{{jats}}">{{/jats}}"/>
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</macro>
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<macro name="author">
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<names variable="author">
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<name prefix="{{jats}}<name>{{/jats}}" suffix="{{jats}}</name>{{/jats}}" name-as-sort-order="all" sort-separator="">
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<name-part name="family" text-case="capitalize-first" prefix="{{jats}}<surname>{{/jats}}" suffix="{{jats}}</surname>{{/jats}}"/>
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<name-part name="given" text-case="capitalize-first" prefix="{{jats}}<given-names>{{/jats}}" suffix="{{jats}}</given-names>{{/jats}}"/>
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</name>
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<substitute>
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<names variable="editor"/>
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</substitute>
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</names>
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</macro>
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<macro name="editor">
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<names variable="editor" prefix="{{jats}}<person-group person-group-type="editor">{{/jats}}" suffix="{{jats}}</person-group>{{/jats}}">
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<name prefix="{{jats}}<name>{{/jats}}" suffix="{{jats}}</name>{{/jats}}" name-as-sort-order="all" sort-separator="">
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<name-part name="family" text-case="capitalize-first" prefix="{{jats}}<surname>{{/jats}}" suffix="{{jats}}</surname>{{/jats}}"/>
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<name-part name="given" text-case="capitalize-first" prefix="{{jats}}<given-names>{{/jats}}" suffix="{{jats}}</given-names>{{/jats}}"/>
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</name>
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<substitute>
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<names variable="editor"/>
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</substitute>
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</names>
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</macro>
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<macro name="editor">
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<group delimiter=": ">
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<names variable="editor">
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<name prefix="{{jats}}<name>{{/jats}}" suffix="{{jats}}</name>{{/jats}}" name-as-sort-order="all" sort-separator="">
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<name-part name="family" text-case="capitalize-first" prefix="{{jats}}<surname>{{/jats}}" suffix="{{jats}}</surname>{{/jats}}"/>
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<name-part name="given" text-case="capitalize-first" prefix="{{jats}}<given-names>{{/jats}}" suffix="{{jats}}<given-names>{{/jats}}"/>
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</name>
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</names>
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</group>
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</macro>
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<macro name="title">
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<choose>
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<if type="book" match="any">
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<group prefix="{{jats}}<source>{{/jats}}" suffix="{{jats}}</source>{{/jats}}">
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<text variable="title"/>
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</group>
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</if>
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<else>
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<group prefix="{{jats}}<article-title>{{/jats}}" suffix="{{jats}}</article-title>{{/jats}}">
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<text variable="title"/>
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</group>
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</else>
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</choose>
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</macro>
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<macro name="container-title">
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<text variable="container-title" form="short" prefix="{{jats}}<source>{{/jats}}" suffix="{{jats}}</source>{{/jats}}"/>
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</macro>
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<macro name="publisher">
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<text variable="publisher" prefix="{{jats}}<publisher-name>{{/jats}}" suffix="{{jats}}</publisher-name>{{/jats}}"/>
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<text variable="publisher-place" prefix="{{jats}}<publisher-loc>{{/jats}}" suffix="{{jats}}</publisher-loc>{{/jats}}"/>
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</macro>
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<macro name="link">
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<choose>
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<if match="any" variable="DOI">
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<group prefix="{{jats}}<pub-id pub-id-type="doi">{{/jats}}" suffix="{{jats}}</pub-id>{{/jats}}">
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<text variable="DOI"/>
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</group>
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</if>
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</choose>
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<choose>
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<if match="any" variable="PMID">
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<group prefix="{{jats}}<ext-link ext-link-type="pmid" {{/jats}}" suffix="{{jats}}</ext-link>{{/jats}}">
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<text variable="PMID" prefix="{{jats}}xlink:href="http://www.ncbi.nlm.nih.gov/pubmed/{{/jats}}" suffix="{{jats}}" xlink:type="simple">{{/jats}}"/>
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<text variable="PMID"/>
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</group>
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</if>
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</choose>
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<choose>
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<if variable="URL" match="any">
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<group prefix="{{jats}}<ext-link ext-link-type="uri" {{/jats}}" suffix="{{jats}}</ext-link>{{/jats}}">
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<text variable="URL" prefix="{{jats}}xlink:href="{{/jats}}" suffix="{{jats}}" xlink:type="simple">{{/jats}}"/>
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<text variable="URL"/>
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</group>
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</if>
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</choose>
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</macro>
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<macro name="date">
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<choose>
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<if type="article-journal article-magazine article-newspaper report patent book" match="any">
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<group prefix="{{jats}}<date>{{/jats}}" suffix="{{jats}}</date>{{/jats}}">
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<date variable="issued">
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<date-part name="day" form="numeric-leading-zeros" prefix="{{jats}}<day>{{/jats}}" suffix="{{jats}}</day>{{/jats}}"/>
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<date-part name="month" form="numeric-leading-zeros" prefix="{{jats}}<month>{{/jats}}" suffix="{{jats}}</month>{{/jats}}"/>
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<date-part name="year" prefix="{{jats}}<year>{{/jats}}" suffix="{{jats}}</year>{{/jats}}"/>
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</date>
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</group>
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</if>
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<else>
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<group prefix="{{jats}}<date-in-citation content-type="access-date"{{/jats}}" suffix="{{jats}}</date-in-citation>{{/jats}}">
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<date variable="accessed" prefix="{{jats}} iso-8601-date="{{/jats}}" suffix="{{jats}}">{{/jats}}">
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<date-part name="year"/>
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<date-part name="month" form="numeric-leading-zeros" prefix="{{jats}}-{{/jats}}"/>
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<date-part name="day" form="numeric-leading-zeros" prefix="{{jats}}-{{/jats}}"/>
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</date>
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<date variable="accessed">
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<date-part name="day" prefix="{{jats}}<day>{{/jats}}" suffix="{{jats}}</day>{{/jats}}"/>
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<date-part name="month" form="numeric-leading-zeros" prefix="{{jats}}<month>{{/jats}}" suffix="{{jats}}</month>{{/jats}}"/>
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<date-part name="year" prefix="{{jats}}<year>{{/jats}}" suffix="{{jats}}</year>{{/jats}}"/>
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</date>
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</group>
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</else>
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</choose>
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</macro>
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<macro name="location">
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<choose>
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<if type="article-journal article-magazine" match="any">
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<text variable="volume" prefix="{{jats}}<volume>{{/jats}}" suffix="{{jats}}</volume>{{/jats}}"/>
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<text variable="issue" prefix="{{jats}}<issue>{{/jats}}" suffix="{{jats}}</issue>{{/jats}}"/>
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</if>
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</choose>
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<choose>
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<if type="article-journal article-magazine article-newspaper chapter" match="any">
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<text variable="page-first" prefix="{{jats}}<fpage>{{/jats}}" suffix="{{jats}}</fpage>{{/jats}}"/>
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</if>
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</choose>
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</macro>
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<macro name="publication-type">
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<group prefix="{{jats}} publication-type="{{/jats}}" suffix="{{jats}}">{{/jats}}">
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<choose>
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<if type="article-journal article-magazine article-newspaper" match="any">
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<text value="journal"/>
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</if>
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<else-if type="book" match="any">
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<text value="book"/>
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</else-if>
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<else-if type="chapter" match="any">
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<text value="bookchapter"/>
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</else-if>
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<else-if type="dataset" match="any">
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<text value="dataset"/>
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</else-if>
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<else-if type="patent" match="any">
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<text value="patent"/>
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</else-if>
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<else-if type="report" match="any">
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<text value="report"/>
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</else-if>
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<else-if type="review" match="any">
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<text value="review"/>
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</else-if>
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<else>
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<text value="standard"/>
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</else>
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</choose>
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</group>
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</macro>
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<citation collapse="citation-number">
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<sort>
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<key variable="citation-number"/>
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</sort>
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<layout delimiter=",">
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<group prefix="{{jats}}<xref ref-type="bibr" rid="{{/jats}}" suffix="{{jats}}</xref>{{/jats}}">
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<text variable="citation-number" prefix="{{jats}}ref-{{/jats}}" suffix="{{jats}}">{{/jats}}"/>
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<text variable="citation-number"/>
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</group>
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</layout>
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</citation>
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<bibliography sort-separator="">
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<layout>
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<group prefix="{{jats}}<ref {{/jats}}" suffix="{{jats}}</ref>{{/jats}}">
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<text macro="citation-number"/>
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<group prefix="{{jats}}<element-citation{{/jats}}" suffix="{{jats}}</element-citation>{{/jats}}">
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<text macro="publication-type"/>
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<text macro="author" prefix="{{jats}}<person-group person-group-type="author">{{/jats}}" suffix="{{jats}}</person-group>{{/jats}}"/>
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<text macro="title" />
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<text macro="container-title"/>
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<text macro="editor"/>
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<text macro="publisher"/>
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<text macro="date"/>
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<text macro="location"/>
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<text macro="link"/>
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</group>
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</group>
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</layout>
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</bibliography>
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</style>
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