Nate Coraor e05f11bc73 Convert a bunch of binary requirement tags to package requirements, and change the sputnik tool to call 'sputnik' instead of 'bx-sputnik'.

2010-10-07 16:23:57 -04:00

..

phastOdds

Fix locations of cached data for tests

2010-02-25 12:27:07 -05:00

extract_genomic_dna.py

Fix bug so that fasta identifier produced by 'extract genomic dna' tool for GFF files is consistent with GFF coordinates.

2010-07-15 17:03:14 -04:00

extract_genomic_dna.xml

Fix filenames problem in 'extract genomic dna' GFF functional tests that was introduced in 4200:291183d3896b .

2010-09-01 09:10:58 -04:00

liftOver_wrapper.py

Fix try-except-finally bug to be compatible with Python 2.4 in several tools and twilltestcase.py. Updated liftOver test to replace hard-coded (incorrect) path and modified code file to allow for new path. Improved bowtie error handling.

2010-03-10 11:51:00 -05:00

liftOver_wrapper.xml

Convert a bunch of binary requirement tags to package requirements, and change the sputnik tool to call 'sputnik' instead of 'bx-sputnik'.

2010-10-07 16:23:57 -04:00