mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-24 16:30:27 +08:00
32 lines
1.3 KiB
Plaintext
32 lines
1.3 KiB
Plaintext
#This is a sample file distributed with Galaxy that is used by some
|
|
#short read tools. The blastdb.loc file has this format:
|
|
#
|
|
#<database> <build_date> <path to base name>
|
|
#
|
|
#where a single space separates the first two and a tab the last two.
|
|
#It is important that the actual database name does not have a space in it,
|
|
#and that the first tab that appears in the line is right before the path.
|
|
#The <build_date> can look any way you want.
|
|
#
|
|
#So, for example, if your database is nt and the path to your base name
|
|
#is /depot/data2/galaxy/blastdb/nt/nt.chunk, then the blastdb.loc entry
|
|
#would look like this:
|
|
#
|
|
#nt 02 Dec 2009 /depot/data2/galaxy/blastdb/nt/nt.chunk
|
|
#
|
|
#and your /depot/data2/galaxy/blastdb/nt directory would contain all of
|
|
#your "base names" (e.g.):
|
|
#
|
|
#-rw-r--r-- 1 wychung galaxy 23437408 2008-04-09 11:26 nt.chunk.00.nhr
|
|
#-rw-r--r-- 1 wychung galaxy 3689920 2008-04-09 11:26 nt.chunk.00.nin
|
|
#-rw-r--r-- 1 wychung galaxy 251215198 2008-04-09 11:26 nt.chunk.00.nsq
|
|
#...etc...
|
|
#
|
|
#Your blastdb.loc file should include an entry per line for each "base name"
|
|
#you have stored. For example:
|
|
#
|
|
#nt 02 Dec 2009 /depot/data2/galaxy/blastdb/nt/nt.chunk
|
|
#wgs 30 Nov 2009 /depot/data2/galaxy/blastdb/wgs/wgs.chunk
|
|
#test 20 Sep 2008 /depot/data2/galaxy/blastdb/test/test
|
|
#...etc...
|