Nicola Soranzo 57af073813 Update application documentation ...

with:
```
make -C doc/ updaterst
```

Also fix 2 links in `doc/source/api/guidelines.rst` .

2019-02-20 14:56:21 +00:00

..

galaxy_ext.metadata.rst

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galaxy_ext.rst

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galaxy.actions.rst

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galaxy.auth.providers.rst

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galaxy.auth.rst

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galaxy.authnz.rst

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galaxy.containers.rst

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galaxy.dataset_collections.rst

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galaxy.dataset_collections.types.rst

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galaxy.datatypes.converters.rst

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galaxy.datatypes.dataproviders.rst

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galaxy.datatypes.display_applications.rst

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galaxy.datatypes.rst

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galaxy.datatypes.util.rst

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galaxy.dependencies.rst

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galaxy.eggs.rst

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galaxy.exceptions.rst

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galaxy.forms.rst

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galaxy.jobs.actions.rst

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galaxy.jobs.metrics.collectl.rst

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galaxy.jobs.metrics.instrumenters.rst

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galaxy.jobs.metrics.rst

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galaxy.jobs.rst

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galaxy.jobs.runners.rst

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galaxy.jobs.runners.state_handlers.rst

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galaxy.jobs.runners.util.cli.job.rst

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galaxy.jobs.runners.util.cli.rst

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galaxy.jobs.runners.util.cli.shell.rst

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galaxy.jobs.runners.util.condor.rst

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galaxy.jobs.runners.util.job_script.rst

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galaxy.jobs.runners.util.rst

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galaxy.jobs.splitters.rst

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galaxy.managers.rst

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galaxy.metadata.rst

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galaxy.model.migrate.rst

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galaxy.model.orm.rst

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galaxy.model.rst

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galaxy.model.tool_shed_install.migrate.rst

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galaxy.model.tool_shed_install.rst

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galaxy.objectstore.rst

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galaxy.quota.rst

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galaxy.rst

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galaxy.security.rst

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galaxy.tools.actions.rst

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galaxy.tools.cwl.rst

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galaxy.tools.data_manager.rst

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galaxy.tools.data.rst

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galaxy.tools.deps.container_resolvers.rst

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galaxy.tools.deps.mulled.rst

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galaxy.tools.deps.resolvers.rst

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galaxy.tools.deps.rst

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galaxy.tools.error_reports.plugins.rst

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galaxy.tools.error_reports.rst

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galaxy.tools.filters.rst

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galaxy.tools.imp_exp.rst

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galaxy.tools.linters.rst

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galaxy.tools.locations.rst

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galaxy.tools.parameters.rst

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galaxy.tools.parser.rst

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galaxy.tools.rst

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galaxy.tools.search.rst

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galaxy.tools.toolbox.filters.rst

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galaxy.tools.toolbox.lineages.rst

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galaxy.tools.toolbox.rst

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galaxy.tools.util.galaxyops.rst

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galaxy.tools.util.rst

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galaxy.tools.verify.asserts.rst

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galaxy.tools.verify.rst

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galaxy.tours.rst

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galaxy.util.logging.rst

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galaxy.util.pastescript.rst

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galaxy.util.path.rst

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galaxy.util.rst

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galaxy.visualization.data_providers.phyloviz.rst

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galaxy.visualization.data_providers.rst

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galaxy.visualization.genome.rst

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galaxy.visualization.plugins.rst

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galaxy.visualization.rst

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galaxy.visualization.tracks.rst

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galaxy.web.base.rst

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galaxy.web.framework.helpers.rst

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galaxy.web.framework.middleware.rst

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galaxy.web.framework.rst

Remove OpenID auth from docs

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galaxy.web.proxy.rst

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galaxy.web.rst

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galaxy.web.security.rst

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galaxy.web.stack.rst

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galaxy.webapps.galaxy.api.rst

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galaxy.webapps.galaxy.controllers.rst

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galaxy.webapps.galaxy.rst

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galaxy.webapps.reports.controllers.rst

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galaxy.webapps.reports.framework.rst

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galaxy.webapps.reports.rst

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galaxy.webapps.rst

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galaxy.webapps.tool_shed.api.rst

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galaxy.webapps.tool_shed.controllers.rst

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galaxy.webapps.tool_shed.framework.middleware.rst

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galaxy.webapps.tool_shed.framework.rst

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galaxy.webapps.tool_shed.model.migrate.rst

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galaxy.webapps.tool_shed.model.rst

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galaxy.webapps.tool_shed.rst

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galaxy.webapps.tool_shed.search.rst

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galaxy.webapps.tool_shed.security.rst

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galaxy.webapps.tool_shed.util.rst

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galaxy.webhooks.rst

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galaxy.work.rst

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galaxy.workflow.resources.rst

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galaxy.workflow.rst

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galaxy.workflow.schedulers.rst

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log_tempfile.rst

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mimeparse.rst

Update to sphinx-apidoc v1.3.1 .

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modules.rst

Migrate galaxy_utils to a wheel.

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psyco_full.rst

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tool_shed.capsule.rst

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tool_shed.dependencies.repository.rst

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tool_shed.dependencies.rst

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tool_shed.dependencies.tool.rst

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tool_shed.galaxy_install.datatypes.rst

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tool_shed.galaxy_install.grids.rst

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tool_shed.galaxy_install.metadata.rst

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tool_shed.galaxy_install.migrate.rst

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tool_shed.galaxy_install.repository_dependencies.rst

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tool_shed.galaxy_install.rst

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tool_shed.galaxy_install.tool_dependencies.recipe.rst

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tool_shed.galaxy_install.tool_dependencies.rst

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tool_shed.galaxy_install.tools.rst

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tool_shed.galaxy_install.utility_containers.rst

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tool_shed.grids.rst

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tool_shed.managers.rst

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tool_shed.metadata.rst

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tool_shed.repository_types.rst

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tool_shed.rst

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tool_shed.tools.rst

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tool_shed.util.rst

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tool_shed.utility_containers.rst

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