Greg Von Kuster 4f56b82e17 Fix for dataset_metadata_in_file validator: all locally cached data files that are columnar must have columns separated by tabs characters, not white space. I've eliminated the 'split' param from the validator as it was causing problems. Extract genomic DNA tool should now finally work correctly.

2008-08-22 11:22:44 -04:00

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phastOdds

Completed an old FIXME in DefaultToolAction.execute() - metadata no longer added to "incoming". Tool config params changed from things like$input_chromCol to ${input.metadata.chromCol}.

2008-07-23 15:27:39 -04:00

extract_genomic_dna_code.py

Removed tool version directiories for some of the tools...the rest soon.

2008-03-03 16:14:06 +00:00

extract_genomic_dna.py

Reverting extract_genomic_dna and blat_wrapper tools to rev 1472.

2008-08-21 08:54:51 -04:00

extract_genomic_dna.xml

Fix for dataset_metadata_in_file validator: all locally cached data files that are columnar must have columns separated by tabs characters, not white space. I've eliminated the 'split' param from the validator as it was causing problems. Extract genomic DNA tool should now finally work correctly.

2008-08-22 11:22:44 -04:00

extract_GFF_Features.py

Separate framework and tool environments.

2008-04-11 20:11:21 +00:00

extract_GFF_Features.xml

Rewrite of dynamic options for select lists. There are no more 'special cases' and new filters are much easier to incorporate, as neeeded.

2008-05-29 17:38:46 +00:00

liftOver_wrapper_code.py

Changes to liftOver tool: Modified the liftOver.loc file and changed the script files as required.

2008-03-21 15:51:40 +00:00

liftOver_wrapper.py

Eliminated all Python2.4 references, added necessary assert statements to ensure minimum version of Python 2.4.

2008-03-28 15:24:50 +00:00

liftOver_wrapper.xml

Changing liftOver input from BED to Interval in order to preserve the contents of columns other than the chromosome, start and end columns. This information was previously being lost during Interval to BED conversion.

2008-06-08 19:28:45 +00:00