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mvdbeek
f9f078b2df
Adopt #23067's store infrastructure wholesale where it is canonical, keeping only genuine lazy-toolbox additions as deltas on top: - Store package: adopt #23067's factory.py/interface.py split and facade __init__.py, and its URL-only SqlAlchemyToolSourceStore. Re-apply lazy-only deltas — ToolIndexEntry panel-contract fields (icon/xrefs/model_class/ form_style/is_workflow_compatible/source_path) and data_manager_id; composite per-version index merge; scored multi-store whoosh search (search_scored + tool_tags field); populator panel-contract derivation via expand_ontology_data + biotools and data_manager_id stamping; data-manager / converter discovery in discover.py; benchmarks.py. - Config: replace tool_source_store + tool_source_disk_path with the single SQLAlchemy URI tool_source_database_connection (defaulted in config/__init__.py, validated via try_parsing, schema attr added), adopt #23067's tool_source_stores wording, and keep the branch-only use_lazy_toolbox / lazy_toolbox_cache_size options. Regenerated galaxy.yml.sample, galaxy_options.rst, and the schema-type stub. galaxy_mock uses tool_source_database_connection. - Docs: adopt #23067's tool_source_storage.rst (admin + dev) as the base and re-add the lazy sections (LazyToolBox, batch-endpoint integration, materialisation-count guard, LazyToolboxSearch multi-store search, benchmarks). - Tests: adopt #23067's store + scripts unit tests; re-add the ours-only composite entries_by_version merge test, data-manager discovery / build-index tests, and multi-store search test, all on the URI config. Claude-Session: https://claude.ai/code/session_018L7ZmCv2ubKA3JNeSL8Pkr