John Chilton 55681f6e2a Improve default handling of Singularity volumes. ...

My understanding is that unlike Docker, Singularity doesn't allow a subdirectory to be mounted rw and its parent to be mounted ro - it will just be ro. This PR adjusts the default volume handling for Singularity to intelligently fallback to mounting parent directories as rw if their child directories are listed as being mounted rw.

Ping @bgruening - is the above a description correct and does this approach work for you?

2017-06-11 22:09:42 -04:00

..

plugins

Merge remote-tracking branch 'upstream/release_17.05' into dev

2017-06-06 15:52:49 -04:00

auth_conf.xml.sample

Fixes to LDAP auth config sample.

2015-09-04 16:31:07 +01:00

build_sites.yml.sample

Pull build_sites out of datatypes conf.

2017-01-30 20:43:29 -05:00

containers_conf.yml.sample

Add an ignore_volumes option for swarm_mode containers

2017-04-17 16:54:54 -04:00

data_manager_conf.xml.sample

Move samples configs to config subdirectory.

2014-09-15 11:28:18 -04:00

datatypes_conf.xml.sample

Fix the Smat sniffer

2017-06-05 10:00:49 -04:00

dependency_resolvers_conf.xml.sample

Prefer versioned Conda dependencies to unversioned Galaxy ones.

2017-03-03 12:54:59 -05:00

disposable_email_blacklist.conf.sample

initial commit of email activation feature

2013-09-19 16:38:12 -04:00

external_service_types_conf.xml.sample

Move samples configs to config subdirectory.

2014-09-15 11:28:18 -04:00

galaxy.ini.sample

Fix older GIE config sample description.

2017-06-07 10:46:39 -04:00

job_conf.xml.sample_advanced

Improve default handling of Singularity volumes.

2017-06-11 22:09:42 -04:00

job_conf.xml.sample_basic

Move samples configs to config subdirectory.

2014-09-15 11:28:18 -04:00

job_metrics_conf.xml.sample

Move samples configs to config subdirectory.

2014-09-15 11:28:18 -04:00

job_resource_params_conf.xml.sample

Move samples configs to config subdirectory.

2014-09-15 11:28:18 -04:00

local_conda_mapping.yml.sample

Samples and defaults for Conda mapping.

2017-01-23 09:47:18 -05:00

migrated_tools_conf.xml.sample

Move samples configs to config subdirectory.

2014-09-15 11:28:18 -04:00

object_store_conf.xml.sample

more consistent naming.

2016-07-21 13:25:53 -04:00

openid_conf.xml.sample

move genomespace as the first shown provider in selection

2017-04-21 13:53:50 -04:00

reports.ini.sample

Synchronize and update documentation for reports and shed.

2016-08-23 09:43:31 -04:00

shed_data_manager_conf.xml.sample

Move samples configs to config subdirectory.

2014-09-15 11:28:18 -04:00

shed_tool_conf.xml.sample

Move samples configs to config subdirectory.

2014-09-15 11:28:18 -04:00

shed_tool_data_table_conf.xml.sample

Move samples configs to config subdirectory.

2014-09-15 11:28:18 -04:00

swarm_manager_conf.yml.sample

GIE container waiting and swarm management.

2017-03-13 21:31:55 -04:00

tool_conf.xml.main

Hide tools that have been replaced.

2016-03-02 11:41:20 -05:00

tool_conf.xml.sample

Implement collection operation for filtering lists from a file.

2017-04-17 17:08:25 -04:00

tool_data_table_conf.xml.sample

Include all three BLAST .loc files in data table conf

2016-11-04 17:00:13 +00:00

tool_destinations.yml.sample

update the documentation

2017-02-28 16:29:01 +01:00

tool_shed.ini.sample

Synchronize and update documentation for reports and shed.

2016-08-23 09:43:31 -04:00

tool_sheds_conf.xml.sample

comment out connection to TTS in sample config

2015-03-24 16:08:21 -04:00

workflow_schedulers_conf.xml.sample

Implement workflow scheduling 'plugin' framework.

2014-11-13 13:47:38 -05:00