Greg Von Kuster f6c9b706a2 merging from central

2008-11-13 15:02:30 -05:00

..

annotation_profiler

Annotation profiler: Better handling of the case where regions extend beyond known chromosome boundaries.

2008-10-30 14:46:57 -04:00

data_destination

merging from central

2008-10-28 11:28:15 -04:00

data_source

merging from central

2008-11-13 15:02:30 -05:00

emboss_5

Forgot to eliminate the emboss path...

2008-04-25 19:07:26 +00:00

encode

Completed an old FIXME in DefaultToolAction.execute() - metadata no longer added to "incoming". Tool config params changed from things like$input_chromCol to ${input.metadata.chromCol}.

2008-07-23 15:27:39 -04:00

extract

Added Validator to a bunch of tools..

2008-10-17 13:02:26 -04:00

fasta_tools

Bug fix for Concatenate FASTA alignment by species tool.

2008-07-29 11:24:28 -04:00

filters

Add functioal test baseline support for the repeat construct, more work needed ( e.g., multiple repeat elements, refresh_on_change when the input to be refreshed is within a repeat construct ). Added functional tests for some tools that use this construct.

2008-11-10 14:22:01 -05:00

hyphy

Revert 2715.

2008-06-04 13:02:15 +00:00

maf

Resolving Merge

2008-10-22 14:03:41 -04:00

metag_tools

update xml files for short reads mapping tools.

2008-10-15 15:51:13 -04:00

new_operations

Added new functional tests to all gops tools using BitsetSafeReaderWrapper. These tests check cases where datasets have the chr,start and end values in non-standard columns.

2008-10-30 16:03:11 -04:00

plotting

Add functioal test baseline support for the repeat construct, more work needed ( e.g., multiple repeat elements, refresh_on_change when the input to be refreshed is within a repeat construct ). Added functional tests for some tools that use this construct.

2008-11-10 14:22:01 -05:00

regVariation

Modified help message for indel rate tool.

2008-10-06 09:33:52 -04:00

sr_mapping

update xml files for short reads mapping tools.

2008-10-15 15:51:13 -04:00

stats

Add functioal test baseline support for the repeat construct, more work needed ( e.g., multiple repeat elements, refresh_on_change when the input to be refreshed is within a repeat construct ). Added functional tests for some tools that use this construct.

2008-11-10 14:22:01 -05:00

taxonomy

typo

2008-07-07 15:17:32 +00:00

validation

Eliminated all Python2.4 references, added necessary assert statements to ensure minimum version of Python 2.4.

2008-03-28 15:24:50 +00:00

visualization

Add functioal test baseline support for the repeat construct, more work needed ( e.g., multiple repeat elements, refresh_on_change when the input to be refreshed is within a repeat construct ). Added functional tests for some tools that use this construct.

2008-11-10 14:22:01 -05:00