mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-01 15:37:32 +08:00
John Chilton
7aa2d6840a
IntegrationTestCases differ from functional tests in that they start up a Galaxy instance configured on a per test class basis - so this new class of "integration tests" can test configuration modalities of Galaxy that cannot be tested with traditional Galaxy functional tests.
121 lines
3.5 KiB
Python
121 lines
3.5 KiB
Python
#!/usr/bin/env python
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"""Test driver for many Galaxy Python functional tests.
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Launch this script by running ``run_tests.sh`` from GALAXY_ROOT, see
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that script for a list of options.
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"""
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import os
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import os.path
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import sys
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galaxy_root = os.path.abspath(os.path.join(os.path.dirname(__file__), os.path.pardir))
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sys.path[1:1] = [ os.path.join( galaxy_root, "lib" ), os.path.join( galaxy_root, "test" ) ]
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from base import driver_util
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log = driver_util.build_logger()
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from base.api_util import get_master_api_key, get_user_api_key
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class MigratedToolsGalaxyTestDriver(driver_util.GalaxyTestDriver):
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"""Instantiate a Galaxy-style nose TestDriver for testing migrated Galaxy tools."""
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testing_shed_tools = True
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def build_tests(self):
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"""Build migrated tool test methods."""
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self.setup_shed_tools(
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testing_migrated_tools=True,
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)
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self.build_tool_tests()
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class InstalledToolsGalaxyTestDriver(driver_util.GalaxyTestDriver):
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"""Galaxy-style nose TestDriver for testing installed Galaxy tools."""
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testing_shed_tools = True
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def build_tests(self):
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"""Build installed tool test methods."""
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self.setup_shed_tools(
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testing_installed_tools=True,
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)
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self.build_tool_tests()
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class DefaultGalaxyTestDriver(driver_util.GalaxyTestDriver):
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"""Default Galaxy-style nose test driver.
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Just populate non-shed tool tests and run tests. Works
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for tool tests, regular twill tests, and API testing.
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"""
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def build_tests(self):
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"""Build framework tool test methods."""
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self.build_tool_tests()
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class FrameworkToolsGalaxyTestDriver(DefaultGalaxyTestDriver):
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"""Galaxy-style nose TestDriver for testing framework Galaxy tools."""
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framework_tool_and_types = True
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class DataManagersGalaxyTestDriver(driver_util.GalaxyTestDriver):
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"""Galaxy-style nose TestDriver for testing framework Galaxy tools."""
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def build_tests(self):
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"""Build data manager test methods."""
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import functional.test_data_managers
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functional.test_data_managers.data_managers = self.app.data_managers
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functional.test_data_managers.build_tests(
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tmp_dir=self.galaxy_test_tmp_dir,
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testing_shed_tools=self.testing_shed_tools,
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master_api_key=get_master_api_key(),
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user_api_key=get_user_api_key(),
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)
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class WorkflowGalaxyTestDriver(driver_util.GalaxyTestDriver):
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"""Galaxy-style nose TestDriver for testing a Galaxy workflow."""
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def build_tests(self):
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"""Setup WorkflowTestCase for test execution."""
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import functional.workflow
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functional.workflow.WorkflowTestCase.master_api_key = get_master_api_key()
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functional.workflow.WorkflowTestCase.user_api_key = get_user_api_key()
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TEST_DRIVERS = {
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'-migrated': MigratedToolsGalaxyTestDriver,
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'-installed': InstalledToolsGalaxyTestDriver,
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'-framework': FrameworkToolsGalaxyTestDriver,
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'-data_managers': DataManagersGalaxyTestDriver,
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'-workflow': WorkflowGalaxyTestDriver,
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}
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def find_test_driver():
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"""Look at command-line args and find the correct Galaxy test driver."""
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test_driver = DefaultGalaxyTestDriver
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for key in TEST_DRIVERS.keys():
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if _check_arg(key):
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test_driver = TEST_DRIVERS[key]
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return test_driver
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def _check_arg( name ):
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try:
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index = sys.argv.index( name )
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del sys.argv[ index ]
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ret_val = True
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except ValueError:
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ret_val = False
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return ret_val
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if __name__ == "__main__":
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driver_util.drive_test(find_test_driver())
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