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John Chilton
606c32998f
- New upload tab for "Collections". - This has a new option to select "Collection Type" in footer. - Collection upload geared toward homogeneous datasets - must specify genome and file format for all files. - New button "Build" after all individual datasets have finished their upload to the server. - Clicking "Build" launches the appropriate collection builder for selected collection type. - By default, uploading a collection hides the original uploaded datasets (can be unchecked). Implement tests for all uploaded collection types.
2 lines
3.6 KiB
JavaScript
2 lines
3.6 KiB
JavaScript
define(["utils/utils","mvc/ui/ui-modal","mvc/ui/ui-tabs","mvc/upload/upload-button","mvc/upload/default/default-view","mvc/upload/composite/composite-view","mvc/upload/collection/collection-view"],function(a,b,c,d,e,f,g){return Backbone.View.extend({options:{nginx_upload_path:"",ftp_upload_site:"n/a",default_genome:"?",default_extension:"auto",height:500,width:900,auto:{id:"auto",text:"Auto-detect",description:"This system will try to detect the file type automatically. If your file is not detected properly as one of the known formats, it most likely means that it has some format problems (e.g., different number of columns on different rows). You can still coerce the system to set your data to the format you think it should be. You can also upload compressed files, which will automatically be decompressed."}},list_extensions:[],list_genomes:[],initialize:function(b){var c=this;this.options=a.merge(b,this.options),this.ui_button=new d.View({onclick:function(a){a.preventDefault(),c.show()},onunload:function(){var a=c.ui_button.model.get("percentage",0);return a>0&&100>a?"Several uploads are queued.":void 0}}),this.setElement(this.ui_button.$el);var c=this;a.get({url:Galaxy.root+"api/datatypes?extension_only=False",success:function(a){for(key in a)c.list_extensions.push({id:a[key].extension,text:a[key].extension,description:a[key].description,description_url:a[key].description_url,composite_files:a[key].composite_files});c.list_extensions.sort(function(a,b){var c=a.text&&a.text.toLowerCase(),d=b.text&&b.text.toLowerCase();return c>d?1:d>c?-1:0}),c.options.datatypes_disable_auto||c.list_extensions.unshift(c.options.auto)}}),a.get({url:Galaxy.root+"api/genomes",success:function(a){for(key in a)c.list_genomes.push({id:a[key][1],text:a[key][0]});c.list_genomes.sort(function(a,b){return a.id==c.options.default_genome?-1:b.id==c.options.default_genome?1:a.text>b.text?1:a.text<b.text?-1:0})}})},show:function(){var a=this;return Galaxy.currHistoryPanel&&Galaxy.currHistoryPanel.model?(this.current_user=Galaxy.user.id,this.modal||(this.tabs=new c.View,this.default_view=new e(this),this.tabs.add({id:"regular",title:"Regular",$el:this.default_view.$el}),this.composite_view=new f(this),this.tabs.add({id:"composite",title:"Composite",$el:this.composite_view.$el}),this.collection_view=new g(this),this.tabs.add({id:"collection",title:"Collection",$el:this.collection_view.$el}),this.modal=new b.View({title:"Download from web or upload from disk",body:this.tabs.$el,height:this.options.height,width:this.options.width,closing_events:!0,title_separator:!1})),void this.modal.show()):void window.setTimeout(function(){a.show()},500)},currentHistory:function(){return this.current_user&&Galaxy.currHistoryPanel.model.get("id")},currentFtp:function(){return this.current_user&&this.options.ftp_upload_site},toData:function(a,b){var c={payload:{tool_id:"upload1",history_id:b||this.currentHistory(),inputs:{}},files:[],error_message:null};if(a&&a.length>0){var d={};d.dbkey=a[0].get("genome",null),d.file_type=a[0].get("extension",null);for(var e in a){var f=a[e];if(f.set("status","running"),!(f.get("file_size")>0)){c.error_message="Upload content incomplete.",f.set("status","error"),f.set("info",c.error_message);break}var g="files_"+e+"|";switch(d[g+"type"]="upload_dataset",d[g+"space_to_tab"]=f.get("space_to_tab")&&"Yes"||null,d[g+"to_posix_lines"]=f.get("to_posix_lines")&&"Yes"||null,f.get("file_mode")){case"new":d[g+"url_paste"]=f.get("url_paste");break;case"ftp":d[g+"ftp_files"]=f.get("file_path");break;case"local":c.files.push({name:g+"file_data",file:f.get("file_data")})}}c.payload.inputs=JSON.stringify(d)}return c}})});
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//# sourceMappingURL=../../../maps/mvc/upload/upload-view.js.map
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