mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-10-16 15:45:04 +08:00
Nicola Soranzo
3d57c22b63
Also fix Python3 compatibility. Remove unused method galaxy.tools.parameters.sanitize.ToolParameterSanitizer.restore_param() .
51 lines
1.5 KiB
Python
Executable File
51 lines
1.5 KiB
Python
Executable File
#!/usr/bin/env python
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"""
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Removes a dataset file ( which was first renamed by appending _purged to the file name ) from disk.
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Usage: python remove_renamed_datasets_from_disk.py renamed.log
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"""
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from __future__ import print_function
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import os
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import sys
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assert sys.version_info[:2] >= ( 2, 4 )
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def usage(prog):
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print("usage: %s file" % prog)
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print("""
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Removes a set of files from disk. The input file should contain a list of files
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to be deleted, one per line. The full path must be specified and must begin
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with /var/opt/galaxy.
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A log of files deleted is created in a file with the same name as that input but
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with .removed.log appended.
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""")
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def main():
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if len(sys.argv) != 2 or sys.argv == "-h" or sys.argv == "--help":
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usage(sys.argv[0])
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sys.exit()
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infile = sys.argv[1]
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outfile = infile + ".removed.log"
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out = open( outfile, 'w' )
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print("# The following renamed datasets have been removed from disk", file=out)
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i = 0
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removed_files = 0
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for i, line in enumerate( open( infile ) ):
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line = line.rstrip( '\r\n' )
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if line and line.startswith( '/var/opt/galaxy' ):
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try:
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os.unlink( line )
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print(line, file=out)
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removed_files += 1
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except Exception as exc:
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print("# Error, exception " + str( exc ) + " caught attempting to remove " + line, file=out)
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print("# Removed " + str( removed_files ) + " files", file=out)
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if __name__ == "__main__":
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main()
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