mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-11-04 23:43:20 +08:00
Nicola Soranzo
0c80836c34
using `ack --type=python -f | grep -v '^tools/' | xargs pyupgrade --py37-plus` Also more refactoring of Python files in `packages/` .
143 lines
4.3 KiB
Python
143 lines
4.3 KiB
Python
#!/usr/bin/env python
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import ast
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import os
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import re
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try:
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from setuptools import setup
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except ImportError:
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from distutils.core import setup
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SOURCE_DIR = "galaxy"
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_version_re = re.compile(r"__version__\s+=\s+(.*)")
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project_short_name = os.path.basename(os.path.dirname(os.path.realpath(__file__)))
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with open(f"{SOURCE_DIR}/project_galaxy_{project_short_name}.py") as f:
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init_contents = f.read()
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def get_var(var_name):
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pattern = re.compile(rf"{var_name}\s+=\s+(.*)")
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match = pattern.search(init_contents).group(1)
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return str(ast.literal_eval(match))
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version = get_var("__version__")
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PROJECT_NAME = get_var("PROJECT_NAME")
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PROJECT_URL = get_var("PROJECT_URL")
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PROJECT_AUTHOR = get_var("PROJECT_AUTHOR")
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PROJECT_EMAIL = get_var("PROJECT_EMAIL")
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PROJECT_DESCRIPTION = get_var("PROJECT_DESCRIPTION")
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TEST_DIR = "tests"
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PACKAGES = [
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"galaxy",
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"galaxy.tool_util",
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"galaxy.tool_util.client",
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"galaxy.tool_util.cwl",
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"galaxy.tool_util.deps",
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"galaxy.tool_util.deps.container_resolvers",
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"galaxy.tool_util.deps.mulled",
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"galaxy.tool_util.deps.resolvers",
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"galaxy.tool_util.linters",
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"galaxy.tool_util.locations",
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"galaxy.tool_util.ontologies",
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"galaxy.tool_util.parser",
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"galaxy.tool_util.toolbox",
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"galaxy.tool_util.toolbox.filters",
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"galaxy.tool_util.toolbox.lineages",
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"galaxy.tool_util.toolbox.views",
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"galaxy.tool_util.verify",
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"galaxy.tool_util.verify.asserts",
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]
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ENTRY_POINTS = """
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[console_scripts]
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galaxy-tool-test=galaxy.tool_util.verify.script:main
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mulled-build=galaxy.tool_util.deps.mulled.mulled_build:main
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mulled-build-channel=galaxy.tool_util.deps.mulled.mulled_build_channel:main
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mulled-search=galaxy.tool_util.deps.mulled.mulled_search:main
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mulled-build-tool=galaxy.tool_util.deps.mulled.mulled_build_tool:main
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mulled-build-files=galaxy.tool_util.deps.mulled.mulled_build_files:main
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mulled-list=galaxy.tool_util.deps.mulled.mulled_list:main
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mulled-update-singularity-containers=galaxy.tool_util.deps.mulled.mulled_update_singularity_containers:main
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mulled-hash=galaxy.tool_util.deps.mulled.mulled_hash:main
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"""
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PACKAGE_DATA = {
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# Be sure to update MANIFEST.in for source dist.
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"galaxy": [
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"tool_util/deps/mulled/invfile.lua",
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"tool_util/deps/resolvers/default_conda_mapping.yml",
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"tool_util/xsd/galaxy.xsd",
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],
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}
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PACKAGE_DIR = {
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SOURCE_DIR: SOURCE_DIR,
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}
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readme = open("README.rst").read()
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history = open("HISTORY.rst").read().replace(".. :changelog:", "")
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if os.path.exists("requirements.txt"):
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requirements = open("requirements.txt").read().split("\n")
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else:
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# In tox, it will cover them anyway.
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requirements = []
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test_requirements = open("test-requirements.txt").read().split("\n")
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setup(
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name=PROJECT_NAME,
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version=version,
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description=PROJECT_DESCRIPTION,
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long_description=readme + "\n\n" + history,
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long_description_content_type="text/x-rst",
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author=PROJECT_AUTHOR,
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author_email=PROJECT_EMAIL,
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url=PROJECT_URL,
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packages=PACKAGES,
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entry_points=ENTRY_POINTS,
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package_data=PACKAGE_DATA,
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package_dir=PACKAGE_DIR,
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include_package_data=True,
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install_requires=requirements,
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extras_require={
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"cwl": [
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"cwltool==3.1.20211107152837",
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],
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"mulled": [
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"conda",
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"cytoolz", # cytoolz is an undeclared dependency of the conda package on PyPI
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"jinja2",
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"Whoosh",
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],
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"edam": [
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"edam-ontology",
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],
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},
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license="AFL",
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zip_safe=False,
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keywords="galaxy",
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classifiers=[
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"Development Status :: 5 - Production/Stable",
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"Intended Audience :: Developers",
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"Environment :: Console",
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"License :: OSI Approved :: Academic Free License (AFL)",
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"Operating System :: POSIX",
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"Topic :: Software Development",
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"Topic :: Software Development :: Code Generators",
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"Topic :: Software Development :: Testing",
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"Natural Language :: English",
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"Programming Language :: Python :: 3",
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"Programming Language :: Python :: 3.7",
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"Programming Language :: Python :: 3.8",
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"Programming Language :: Python :: 3.9",
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"Programming Language :: Python :: 3.10",
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],
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test_suite=TEST_DIR,
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tests_require=test_requirements,
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)
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