mirror of
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97 lines
5.0 KiB
XML
97 lines
5.0 KiB
XML
<?xml version="1.0"?>
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<job_conf>
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<plugins workers="4">
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<!-- "workers" is the number of threads for the runner's work queue.
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The default from <plugins> is used if not defined for a <plugin>.
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-->
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<plugin id="local" type="runner" load="galaxy.jobs.runners.local:LocalJobRunner"/>
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<plugin id="pbs" type="runner" load="galaxy.jobs.runners.pbs:PBSJobRunner" workers="2"/>
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<plugin id="drmaa" type="runner" load="galaxy.jobs.runners.drmaa:DRMAAJobRunner"/>
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<plugin id="lwr" type="runner" load="galaxy.jobs.runners.lwr:LwrJobRunner">
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<!-- More information on LWR can be found at https://lwr.readthedocs.org -->
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<!-- Uncomment following line to use libcurl to perform HTTP calls (defaults to urllib) -->
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<!-- <param id="transport">curl</param> -->
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</plugin>
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<plugin id="cli" type="runner" load="galaxy.jobs.runners.cli:ShellJobRunner" />
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<plugin id="condor" type="runner" load="galaxy.jobs.runners.condor:CondorJobRunner" />
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</plugins>
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<handlers default="handlers">
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<!-- Additional job handlers - the id should match the name of a
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[server:<id>] in universe_wsgi.ini.
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-->
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<handler id="handler0" tags="handlers"/>
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<handler id="handler1" tags="handlers"/>
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<handler id="special_handler0" tags="special_handlers"/>
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<handler id="special_handler1" tags="special_handlers"/>
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<handler id="trackster_handler"/>
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</handlers>
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<destinations default="local">
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<!-- Destinations define details about remote resources and how jobs
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should be executed on those remote resources.
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-->
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<destination id="local" runner="local"/>
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<destination id="pbs" runner="pbs" tags="mycluster"/>
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<destination id="pbs_longjobs" runner="pbs" tags="mycluster,longjobs">
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<!-- Define parameters that are native to the job runner plugin. -->
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<param id="Resource_List">walltime=72:00:00</param>
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</destination>
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<destination id="remote_cluster" runner="drmaa" tags="longjobs"/>
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<destination id="real_user_cluster" runner="drmaa">
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<!-- TODO: The real user options should maybe not be considered runner params. -->
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<param id="galaxy_external_runjob_script">scripts/drmaa_external_runner.py</param>
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<param id="galaxy_external_killjob_script">scripts/drmaa_external_killer.py</param>
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<param id="galaxy_external_chown_script">scripts/external_chown_script.py</param>
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</destination>
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<destination id="dynamic" runner="dynamic">
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<!-- A destination that represents a method in the dynamic runner. -->
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<param id="function">foo</param>
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</destination>
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<destination id="secure_lwr" runner="lwr">
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<param id="url">https://windowshost.examle.com:8913/</param>
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<!-- If set, private_token must match token remote LWR server configured with. -->
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<param id="private_token">123456789changeme</param>
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<!-- Uncomment the following statement to disable file staging (e.g.
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if there is a shared file system between Galaxy and the LWR
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server). -->
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<!-- <param id="default_file_action">none</param> -->
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</destination>
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<destination id="ssh_torque" runner="cli">
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<param id="shell_plugin">SecureShell</param>
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<param id="job_plugin">Torque</param>
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<param id="shell_username">foo</param>
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<param id="shell_hostname">foo.example.org</param>
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<param id="Job_Execution_Time">24:00:00</param>
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</destination>
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<destination id="condor" runner="condor">
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<!-- With no params, jobs are submitted to the 'vanilla' universe with:
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notification = NEVER
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getenv = true
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Additional/override query ClassAd params can be specified with
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<param> tags.
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-->
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<param id="request_cpus">8</param>
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</destination>
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</destinations>
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<tools>
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<!-- Tools can be configured to use specific destinations or handlers,
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identified by either the "id" or "tags" attribute. If assigned to
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a tag, a handler or destination that matches that tag will be
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chosen at random.
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-->
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<tool id="foo" handler="trackster_handler">
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<param id="source">trackster</param>
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</tool>
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<tool id="bar" destination="dynamic"/>
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<tool id="baz" handler="special_handlers" destination="bigmem"/>
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</tools>
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<limits>
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<!-- Certain limits can be defined. -->
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<limit type="registered_user_concurrent_jobs">2</limit>
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<limit type="unregistered_user_concurrent_jobs">1</limit>
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<limit type="job_walltime">24:00:00</limit>
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<limit type="concurrent_jobs" id="local">1</limit>
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<limit type="concurrent_jobs" tag="mycluster">2</limit>
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<limit type="concurrent_jobs" tag="longjobs">1</limit>
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</limits>
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</job_conf>
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