Daniel Blankenberg 092fc17ec0 Merge pull request #846 from jmchilton/ucsc_cleanup ...

UCSC Tool Cleanup

2015-10-05 17:05:56 -04:00

..

data_source

Merge pull request #846 from jmchilton/ucsc_cleanup

2015-10-05 17:05:56 -04:00

evolution

Fixes for @jmchilton and @dannon.

2015-06-17 19:37:45 +01:00

extract

Update liftOver_wrapper.xml

2015-08-12 10:57:42 +02:00

filters

Update documentation for the gff_filter_by_attribute tool

2015-10-05 18:43:36 +02:00

genomespace

Have GenomeSpace tools report the GS tool name (for their internal metrics). Default is "Galaxy", but can be overridden by setting "GENOMESPACE_TOOLNAME" environment variable.

2015-09-10 14:45:40 -04:00

maf

Remove numpy requirement, not used since commit 09ce7a9b17 .

2015-05-15 12:41:08 +01:00

meme

Specify meme requirement for fimo tool.

2012-02-02 21:29:30 -06:00

metag_tools

Migrate 22 tools from the distribution to the tool shed.

2014-05-19 13:01:46 -04:00

next_gen_conversion

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00

ngs_simulation

Add rpy requirement.

2014-11-14 14:56:28 +00:00

phenotype_association

Fix all E712 errors. Standardize sqlalchemy imports.

2015-07-14 20:49:34 +01:00

plotting

Use requirements of type="package" instead of deprecated "binary".

2015-05-15 12:43:15 +01:00

solid_tools

dos2unix of tools/ directory. Some whitespace and PEP-8 fixes.

2015-05-15 12:40:52 +01:00

sr_assembly

Use from_work_dir instead of copying output files line by line. Write velvetg output to stdout.

2014-10-28 18:45:17 +01:00

sr_mapping

Add more distribution tool citations.

2015-10-05 15:16:50 +01:00

stats

Remove superflous assignment left over from

2015-07-13 14:55:33 -04:00

validation

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00

visualization

Add citations to a few more tools.

2015-10-05 15:12:46 +01:00