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164 lines
3.4 KiB
YAML
164 lines
3.4 KiB
YAML
id: simple_constructs_y
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name: simple_constructs_y
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class: GalaxyTool
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version: 1.0
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description: Simple constructs
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edam_operations:
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- operation_0004
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- operation_0336
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edam_topics:
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- topic_0003
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- topic_3372
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shell_command:
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>
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echo "$(inputs.booltest)" > 'out_file1.txt';
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echo "$(inputs.inttest)" >> 'out_file1.txt';
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echo "$(inputs.floattest)" >> 'out_file1.txt';
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cat "$(inputs.simp_file['path'])" >> 'out_file1.txt';
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echo "$(inputs.drop_select)" >> 'out_file1.txt';
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echo "$(inputs.radio_select)" >> 'out_file1.txt';
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echo "$(inputs.check_select)" >> 'out_file1.txt';
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cat "$(inputs.more_files[0].nestinput['path'])" >> 'out_file1.txt';
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echo "$(inputs.p1.p1val)" >> 'out_file1.txt';
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inputs:
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- name: booltest
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type: boolean
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# These don't work with YAML tools?
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# truevalue: booltrue
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# falsevalue: boolfalse
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checked: false
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- name: inttest
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type: integer
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value: 1
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- name: floattest
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type: float
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value: 1.0
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- name: simp_file
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type: data
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- name: drop_select
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type: select
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options:
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- value: a_drop
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selected: true
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label: A Drop
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- value: b_drop
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label: B Drop
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- value: c_drop
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label: C Drop
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- name: radio_select
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type: select
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display: radio
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options:
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- value: a_radio
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label: A Radio
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selected: true
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- value: b_radio
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label: B Radio
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- value: c_radio
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label: C Radio
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- name: check_select
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display: checkboxes
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type: select
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multiple: true
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options:
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- value: a_check
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selected: true
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label: A Check
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- value: b_check
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label: B Check
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- value: c_check
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label: C Check
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- name: more_files
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label: "More Files"
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type: repeat
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blocks:
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- type: data
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name: nestinput
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- name: p1
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type: conditional
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test_parameter:
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type: boolean
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name: p1use
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when:
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true:
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- name: p1val
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type: text
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value: p1used
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false:
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- name: p1val
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type: text
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value: p1notused
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outputs:
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out_file1:
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from_work_dir: out_file1.txt
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format: txt
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tests:
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- inputs:
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booltest: true
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inttest: 12456
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floattest: 6.789
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simp_file:
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class: File
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path: simple_line.txt
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more_files:
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- nestinput:
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class: File
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path: simple_line_alternative.txt
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p1:
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p1use: true
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outputs:
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out_file1:
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asserts:
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- that: has_line
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# drop because truevalue doesn't work in YAML tools
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# line: booltrue
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line: "true"
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- that: has_line
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line: '12456'
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- that: has_line
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line: '6.789'
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- that: has_line
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line: "This is a line of text."
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- that: has_line
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line: "This is a different line of text."
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- that: has_line
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line: p1used
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- that: has_line
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line: a_drop
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- that: has_line
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line: '[a_check]'
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- that: has_line
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line: a_radio
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- inputs:
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simp_file:
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class: File
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path: simple_line.txt
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more_files:
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- nestinput:
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class: File
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path: simple_line_alternative.txt
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check_select:
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- a_check
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- b_check
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outputs:
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out_file1:
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asserts:
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has_line:
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line: "[a_check, b_check]"
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- inputs:
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simp_file:
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class: File
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path: simple_line.txt
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more_files:
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- nestinput:
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class: File
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path: simple_line_alternative.txt
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p1:
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p1use: false
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outputs:
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out_file1:
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asserts:
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has_line:
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line: p1notused
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