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https://github.com/galaxyproject/galaxy.git
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John ChiltonandClaude Opus 4.6
2a0f9155be
Add data-description attributes to GalaxyWizard.vue and DatasetError.vue for test selectors. Add navigation helpers and Selenium test exercising the inline error analysis widget with the static agent backend. Fix broken stderr redirect in detect_errors.xml (>2& → >&2). Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
140 lines
6.4 KiB
XML
140 lines
6.4 KiB
XML
<tool id="detect_errors" name="detect_errors" version="1.0.0">
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<stdio>
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<exit_code range="3:5" level="warning" description="Low disk space" />
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<exit_code range="6:" level="fatal" description="Bad input dataset" />
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<exit_code range="2" level="fatal_oom" description="Out of Memory" />
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<regex match="message" source="stdout" level="log" description="some program message of interest"/>
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<regex match="low space" source="both" level="warning" description="Low space on device" />
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<regex match="error" source="stderr" level="fatal" description="Unknown error encountered" />
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<regex match="out of memory" source="stdout" level="fatal_oom" description="Out of memory error occurred" />
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<regex match="[CG]{12}" description="Fatal error - CG island 12 nts long found" />
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<regex match="^Branch A" level="warning" description="Branch A was taken in execution" />
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</stdio>
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<command><![CDATA[
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#if str($stdoutmsg) != ""
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echo '$stdoutmsg' &&
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#end if
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#if str($stderrmsg) != ""
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>&2 echo '$stderrmsg' &&
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#end if
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sh -c 'exit $exit_code'
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]]>
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</command>
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<inputs>
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<param name="stdoutmsg" type="text" value="" label="messages to stdout" />
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<param name="stderrmsg" type="text" value="" label="messages to stderr" />
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<param name="exit_code" type="integer" value="0" label="exit code"/>
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</inputs>
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<outputs>
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<data name="out_file1" />
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</outputs>
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<tests>
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<!-- exit code + regex tests -->
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<!-- successful run (warning exit code + log and warning messages) -->
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<test expect_exit_code="3" expect_failure="false">
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<param name="stdoutmsg" value="message: everything is fine" />
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<param name="stderrmsg" value="low space" />
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<param name="exit_code" value="3" />
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<assert_stdout>
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<has_line line="Log: some program message of interest"/>
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</assert_stdout>
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<assert_stderr>
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<has_line line="Warning: Exit code 3 (Low disk space)"/>
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<has_line line="Warning: Low space on device"/>
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</assert_stderr>
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</test>
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<!-- unccessful run (fatal exit code + warning in output messages are detected) -->
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<test expect_exit_code="23" expect_failure="true">
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<param name="stdoutmsg" value="Branch A seems to be of iterest .. maybe its related to the error?" />
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<param name="exit_code" value="23" />
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<assert_stdout>
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<has_line line="Warning: Branch A was taken in execution"/>
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</assert_stdout>
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<assert_stderr>
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<has_line line="Fatal error: Exit code 23 (Bad input dataset)"/>
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</assert_stderr>
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</test>
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<!-- unccessful run (fatal exit code + fatal_oom message is detected) -->
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<test expect_exit_code="6" expect_failure="true">
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<param name="stdoutmsg" value="out of memory" />
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<param name="exit_code" value="6" />
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<assert_stdout>
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<has_line line="Out of memory error: Out of memory error occurred"/>
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</assert_stdout>
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<assert_stderr>
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<has_line line="Fatal error: Exit code 6 (Bad input dataset)"/>
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</assert_stderr>
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</test>
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<!-- unccessful run (good exit code + fatal message) -->
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<test expect_exit_code="0" expect_failure="true">
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<param name="stdoutmsg" value="CGCGCGCGCGCGCGCGCGCGCGCGCGCGCGCGCG" />
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<param name="exit_code" value="0" />
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<assert_stdout>
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<has_line line="Fatal error: Fatal error - CG island 12 nts long found"/>
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</assert_stdout>
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</test>
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<!-- unccessful run (fatal oom exit code + fatal_oom message is detected .. latter is expected to be undetected) -->
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<test expect_exit_code="2" expect_failure="true">
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<param name="stdoutmsg" value="out of memory" />
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<param name="exit_code" value="2" />
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<assert_stdout>
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<not_has_text text="Out of memory error: Out of memory error occurred"/>
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<has_line line="out of memory"/>
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</assert_stdout>
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<assert_stderr>
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<has_line line="Out of memory error: Exit code 2 (Out of Memory)"/>
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</assert_stderr>
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</test>
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<!-- exit code tests -->
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<!-- successful run -->
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<test expect_exit_code="0" expect_failure="false">
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<param name="stdoutmsg" value="everything is fine" />
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<param name="exit_code" value="0" />
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<assert_stdout>
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<has_line line="everything is fine"/>
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</assert_stdout>
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</test>
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<!-- exit code without meaning -->
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<test expect_exit_code="1" expect_failure="false">
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<param name="stdoutmsg" value="everything is fine" />
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<param name="exit_code" value="1" />
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<assert_stdout>
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<has_line line="everything is fine" />
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</assert_stdout>
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</test>
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<!-- exit code indicating warning -->
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<test expect_exit_code="4" expect_failure="false">
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<param name="stdoutmsg" value="everything is fine" />
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<param name="exit_code" value="4" />
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<assert_stdout>
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<has_line line="everything is fine" />
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</assert_stdout>
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</test>
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<!-- exit code indicating error -->
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<test expect_exit_code="42" expect_failure="true">
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<param name="stdoutmsg" value="everything just seems fine so far... but it isn't" />
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<param name="exit_code" value="42" />
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<assert_stdout>
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<has_line line="everything just seems fine so far... but it isn__sq__t" />
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</assert_stdout>
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<assert_stderr>
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<has_line line="Fatal error: Exit code 42 (Bad input dataset)" />
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</assert_stderr>
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</test>
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<!-- exit code indicating oom_error -->
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<test expect_exit_code="2" expect_failure="true">
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<param name="stdoutmsg" value="everything just seems fine so far... but it isn't" />
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<param name="exit_code" value="2" />
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<assert_stdout>
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<has_line line="everything just seems fine so far... but it isn__sq__t" />
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</assert_stdout>
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<assert_stderr>
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<has_line line="Out of memory error: Exit code 2 (Out of Memory)" />
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</assert_stderr>
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</test>
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</tests>
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<help>
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</help>
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</tool>
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