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15 lines
537 B
Bash
Executable File
15 lines
537 B
Bash
Executable File
echo "Getting files from NCBI..."
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wget ftp://ftp.ncbi.nih.gov/pub/taxonomy/taxdump.tar.gz
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wget ftp://ftp.ncbi.nih.gov/pub/taxonomy/gi_taxid_nucl.dmp.gz
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wget ftp://ftp.ncbi.nih.gov/pub/taxonomy/gi_taxid_prot.dmp.gz
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echo "Unzipping untarring..."
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gunzip -c taxdump.tar.gz | tar xvf -
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gunzip gi_taxid_nucl.dmp.gz
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gunzip gi_taxid_prot.dmp.gz
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cat gi_taxid_nucl.dmp gi_taxid_prot.dmp > gi_taxid_all.dmp
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echo "Sorting gi2tax files..."
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sort -n -k 1 gi_taxid_all.dmp > gi_taxid_sorted.txt
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rm gi_taxid_nucl.dmp gi_taxid_prot.dmp gi_taxid_all.dmp
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