mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-19 10:51:34 +08:00
26 lines
956 B
Plaintext
26 lines
956 B
Plaintext
#This is a sample file distributed with Galaxy that enables tools
|
|
#to use a directory of nib genome files for use with codingSnps. You will
|
|
#need to supply these files and then create a codingSnps.loc file
|
|
#similar to this one (store it in this directory) that points to
|
|
#the directories in which those files are stored. The codingSnps.loc
|
|
#file has this format (white space characters are TAB characters):
|
|
#
|
|
#<build> <file_path>
|
|
#
|
|
#So, for example, if your codingSnps.loc began like this:
|
|
#
|
|
#hg18 /afs/bx.psu.edu/depot/data/genome/hg18/
|
|
|
|
#
|
|
#then your /afs/bx.psu.edu/depot/data/genome/hg18/ directory
|
|
#would need to contain the following 2bit file:
|
|
#
|
|
#
|
|
#-rw-r--r-- 1 g2data g2data 807604784 Dec 8 13:21 hg18.2bit
|
|
|
|
#Your codingSnps.loc file should include an entry per line for
|
|
#each file you have stored that you want to be available. Note that
|
|
#your files should all have the extension '2bit'.
|
|
|
|
hg18 /afs/bx.psu.edu/depot/data/genome/hg18
|