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John Chilton 7b294fcaaa Implement tool upgrade assistant script. 
Inspect a tool's XML file and provide advice on upgrading to new tool versions. It is implemented as a library in tool_util for integration with Planemo in the future but I've added a script here to run it on the command-line directly. It can also output in JSON for integration with external tools such as the galaxy language server.
2024-08-24 11:22:43 -04:00
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app
Update package dev versions
2024-07-02 17:07:31 -04:00
auth
Update package dev versions
2024-07-02 17:07:31 -04:00
build_scripts
Fix package version handling for initial release
2023-09-26 09:15:49 -04:00
config
Update package dev versions
2024-07-02 17:07:31 -04:00
data
Install isa-rwval from my fork to relax pin on networkx
2024-07-03 13:56:47 +01:00
files
Update package dev versions
2024-07-02 17:07:31 -04:00
job_execution
Update package dev versions
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job_metrics
Update package dev versions
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meta
Update package dev versions
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navigation
Update package dev versions
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objectstore
Update package dev versions
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schema
Update package dev versions
2024-07-02 17:07:31 -04:00
selenium
Update package dev versions
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test_api
Update package dev versions
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test_base
Update package dev versions
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test_driver
Update package dev versions
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test_selenium
Update package dev versions
2024-07-02 17:07:31 -04:00
tool_shed
Update package dev versions
2024-07-02 17:07:31 -04:00
tool_util
Implement tool upgrade assistant script.
2024-08-24 11:22:43 -04:00
tours
Update package dev versions
2024-07-02 17:07:31 -04:00
util
Update package dev versions
2024-07-02 17:07:31 -04:00
web_apps
Update package dev versions
2024-07-02 17:07:31 -04:00
web_framework
Update package dev versions
2024-07-02 17:07:31 -04:00
web_stack
Update package dev versions
2024-07-02 17:07:31 -04:00
build_packages.sh
Partially remove bash-specific syntax
2024-02-01 12:22:21 -05:00
package-dev-requirements.txt
Update scripts for modernised package build
2022-06-10 16:34:09 +01:00
package-pyproject.toml
Modernise build of galaxy-util package
2022-06-09 22:55:07 +01:00
package-pytest.ini
Add `pytest.ini` files to all packages
2024-06-02 20:19:32 +01:00
package.__init__.py
Enable `warn_unused_ignores` mypy option
2024-04-16 01:12:58 +01:00
package.Makefile
Move mypy option from command invocation to mypy.ini
2023-03-29 08:55:51 +01:00
packages_by_dep_dag.txt
Fix testing of the galaxy-tool-shed package
2023-11-21 18:08:28 +00:00
packages_for_pulsar_by_dep_dag.txt
Add GitHub CI workflow to test on Python 3.7 the packages needed by Pulsar
2023-09-06 11:07:56 +01:00
test.sh
Add `pytest.ini` files to all packages
2024-06-02 20:19:32 +01:00