galaxy

api

Python3: fix remaining print statements

2017-10-12 18:34:29 +01:00

auth

Fixes for pycodestyle 2.2.0

2016-11-15 16:56:50 +00:00

cleanup_datasets

Merge branch 'release_17.09' into dev

2017-10-23 10:38:14 -04:00

communication

Fix import order and Python3 compatibility

2017-08-18 12:35:04 +01:00

data_libraries

Backport of hardening fixes to 17.09

2017-10-18 13:03:49 -04:00

grt

Backport of hardening fixes to 17.09

2017-10-18 13:03:49 -04:00

loc_files

Python3: fix remaining print statements

2017-10-12 18:34:29 +01:00

metagenomics

Python3: fix remaining print statements

2017-10-12 18:34:29 +01:00

microbes

Backport of hardening fixes to 17.09

2017-10-18 13:03:49 -04:00

migrate_tools

Python3: fix remaining print statements

2017-10-12 18:34:29 +01:00

others

Python3: fix remaining print statements

2017-10-12 18:34:29 +01:00

slideshow

Python3: fix remaining print statements

2017-10-12 18:34:29 +01:00

taxonomy

Tweaks to taxonomy tools

2010-11-15 15:04:59 -05:00

tool_shed

Backport of hardening fixes to 17.09

2017-10-18 13:03:49 -04:00

tools

Python3: fix remaining print statements

2017-10-12 18:34:29 +01:00

__init__.py

Adding db_shell.py that can be used to simplify writing command line

2012-03-05 12:11:53 -06:00

bootstrap_history.py

rename wiki to hub

2017-10-24 10:48:16 -04:00

build_toolbox.py

Fix I201 errors from flake8-import-order

2016-11-23 18:31:04 +00:00

build_universe_config.py

Fixes for pycodestyle 2.2.0

2016-11-15 16:56:50 +00:00

check_eggs.py

Add stub fetch_eggs.py/check_eggs.py for people whose build/test/run

2015-11-06 11:06:11 -05:00

check_galaxy.py

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

check_python.py

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

common_startup_functions.sh

Small tweaks to fixup #2866 .

2017-09-22 14:47:15 -04:00

common_startup.sh

Explicitly include PyPI as an --extra-index-url to pip so we can install

2017-09-21 16:33:40 -04:00

config_sample_to_kwalify.py

Scripts to manage configuration infrastructure.

2017-08-10 13:14:55 -04:00

create_db.py

Fixes for pycodestyle 2.2.0

2016-11-15 16:56:50 +00:00

db_shell.py

Python3: fix remaining print statements

2017-10-12 18:34:29 +01:00

drmaa_external_killer.py

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

drmaa_external_runner.py

Fix E127 errors introduced by previous commit

2017-08-17 11:35:39 +01:00

dump_tour.py

Fix import order for cron/, scripts/ and test/

2017-09-25 23:44:39 +01:00

edam_mapping.py

Backport of hardening fixes to 17.09

2017-10-18 13:03:49 -04:00

external_chown_script.py

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

extract_dataset_part.py

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

extract_toolbox_sections.py

Python3: fix remaining print statements

2017-10-12 18:34:29 +01:00

fetch_eggs.py

Fix import order for cron/, scripts/ and test/

2017-09-25 23:44:39 +01:00

functional_tests.py

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

galaxy-main

Fix a bunch of errors reported by Sphinx

2016-10-24 19:42:19 +01:00

get_platforms.py

Python3: fix remaining print statements

2017-10-12 18:34:29 +01:00

helper.py

Python3: fix remaining print statements

2017-10-12 18:34:29 +01:00

manage_db.py

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

manage_tool_dependencies.py

Fix import order for cron/, scripts/ and test/

2017-09-25 23:44:39 +01:00

manage_tools.py

Python3: fix remaining print statements

2017-10-12 18:34:29 +01:00

nosetests.py

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

paster.py

Fix import order for cron/, scripts/ and test/

2017-09-25 23:44:39 +01:00

patch.sh

Add the script I used to create security patches

2016-02-24 16:54:30 -05:00

rst2html.py

Fix import order for cron/, scripts/ and test/

2017-09-25 23:44:39 +01:00

runtime_stats.py

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

secret_decoder_ring.py

Fix import order and Python3 compatibility

2017-08-18 12:35:04 +01:00

set_dataset_sizes.py

Python3: fix remaining print statements

2017-10-12 18:34:29 +01:00

set_user_disk_usage.py

Python3: fix remaining print statements

2017-10-12 18:34:29 +01:00

summarize_timings.py

Fix import order for cron/, scripts/ and test/

2017-09-25 23:44:39 +01:00

sync_reports_config.py

Fixes for pycodestyle 2.2.0

2016-11-15 16:56:50 +00:00

transfer.py

Backport of hardening fixes to 17.09

2017-10-18 13:03:49 -04:00

update_shed_config_path.py

Python3: fix remaining print statements

2017-10-12 18:34:29 +01:00

validate_tools.sh

Refactor most of tool validation for CI into a standalone script.

2016-09-16 15:07:42 -04:00