galaxy

access_libraries.xml

Several data library improvements:

2011-01-31 16:41:03 -05:00

bed_convert.xml

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biomart_test.xml

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biomart.xml

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bx_browser.xml

name change: _BX main_ browser -> _BX_ table browser

2012-08-22 15:31:23 -04:00

cbi_rice_mart.xml

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data_source.py

Handle non-ascii unicode in data source tools. Add util.is_binary() method that returns true when provided string contains a null byte.

2012-08-28 19:23:39 -04:00

ebi_sra.xml

Change EBI SRA tool to use auto detect for format determination now that they are providing additional formats. Fixes issue seen when sending SFF files.

2013-06-26 11:57:51 -04:00

echo.py

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echo.xml

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encode_db.xml

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epigraph_import_test.xml

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epigraph_import.xml

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eupathdb.xml

pdate EuPathDB datasource configuration file. Contributed by Mark Heiges.

2011-08-22 14:03:57 -04:00

fetch.py

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fly_modencode.xml

Some reworking of data_source tools and the standard data_source.py script. Remove hard-coded special-case handling of UCSC Table Browser and GBrowse datasource tools; functionality remains, but is now a part of the individual tools' XML configuration files. Auto-detect is now available by providing data_type=auto parameters.

2011-04-21 13:12:10 -04:00

flymine_test.xml

Remove link target from intermine datasource tools.

2011-03-22 20:29:32 -04:00

flymine.xml

Some reworking of data_source tools and the standard data_source.py script. Remove hard-coded special-case handling of UCSC Table Browser and GBrowse datasource tools; functionality remains, but is now a part of the individual tools' XML configuration files. Auto-detect is now available by providing data_type=auto parameters.

2011-04-21 13:12:10 -04:00

genbank.py

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genbank.xml

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gramene_mart.xml

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hapmapmart.xml

adding hapmapmart.xml to tools/data_source

2010-11-18 10:30:27 -05:00

hbvar_filter.py

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hbvar.xml

Rewrite HbVar datasource tool.

2012-05-04 15:35:51 -04:00

import.py

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import.xml

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metabolicmine.xml

Remove link target from intermine datasource tools.

2011-03-22 20:29:32 -04:00

microbial_import_code.py

Fix outdated usage of states in microbial dataset post-job hook.

2013-10-10 12:53:10 -04:00

microbial_import.py

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microbial_import.xml

Update links to reflect Galaxy Wiki moving away from Bitbucket.

2011-07-18 18:10:55 -05:00

modmine.xml

Remove link target from intermine datasource tools.

2011-03-22 20:29:32 -04:00

mousemine.xml

Add MouseMine datasource tool provided by Howie Motenko (Howie.Motenko@jax.org).

2013-02-06 17:34:36 -05:00

ratmine.xml

Some reworking of data_source tools and the standard data_source.py script. Remove hard-coded special-case handling of UCSC Table Browser and GBrowse datasource tools; functionality remains, but is now a part of the individual tools' XML configuration files. Auto-detect is now available by providing data_type=auto parameters.

2011-04-21 13:12:10 -04:00

ucsc_archaea.xml

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ucsc_filter.py

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ucsc_proxy.py

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ucsc_proxy.xml

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ucsc_tablebrowser_archaea.xml

Some reworking of data_source tools and the standard data_source.py script. Remove hard-coded special-case handling of UCSC Table Browser and GBrowse datasource tools; functionality remains, but is now a part of the individual tools' XML configuration files. Auto-detect is now available by providing data_type=auto parameters.

2011-04-21 13:12:10 -04:00

ucsc_tablebrowser_test.xml

Some reworking of data_source tools and the standard data_source.py script. Remove hard-coded special-case handling of UCSC Table Browser and GBrowse datasource tools; functionality remains, but is now a part of the individual tools' XML configuration files. Auto-detect is now available by providing data_type=auto parameters.

2011-04-21 13:12:10 -04:00

ucsc_tablebrowser.xml

Backed out changeset 48bbe32beefe which introduced a whole bunch of unintended reversions from a broken hg repository

2011-07-06 09:44:56 +10:00

ucsc_testproxy.xml

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upload.py

Merged in nsoranzo/galaxy-central (pull request #135 )

2013-04-04 08:41:54 -04:00

upload.xml

Fix inadvertently committed Galaxy upload tool config setting ajax upload to false.

2013-07-12 11:13:27 -04:00

worm_modencode.xml

Some reworking of data_source tools and the standard data_source.py script. Remove hard-coded special-case handling of UCSC Table Browser and GBrowse datasource tools; functionality remains, but is now a part of the individual tools' XML configuration files. Auto-detect is now available by providing data_type=auto parameters.

2011-04-21 13:12:10 -04:00

wormbase_test.xml

Some reworking of data_source tools and the standard data_source.py script. Remove hard-coded special-case handling of UCSC Table Browser and GBrowse datasource tools; functionality remains, but is now a part of the individual tools' XML configuration files. Auto-detect is now available by providing data_type=auto parameters.

2011-04-21 13:12:10 -04:00

wormbase.xml

Update WormBase datasource tool to use WormBase 2.

2012-05-02 17:04:33 -04:00

yeastmine.xml

Some reworking of data_source tools and the standard data_source.py script. Remove hard-coded special-case handling of UCSC Table Browser and GBrowse datasource tools; functionality remains, but is now a part of the individual tools' XML configuration files. Auto-detect is now available by providing data_type=auto parameters.

2011-04-21 13:12:10 -04:00