Nate Coraor 4c07734f57 Merge branch 'release_15.10' into release_16.01

2016-12-15 12:55:39 -05:00

..

data_source

Refactor galaxy.datatypes.checkers into galaxy.util.checkers.

2015-12-17 15:41:06 +00:00

evolution

Remove remaining references to galaxy.eggs . flake8 some files in tools/ .

2015-10-26 19:29:13 +00:00

extract

Remove remaining references to galaxy.eggs . flake8 some files in tools/ .

2015-10-26 19:29:13 +00:00

filters

Merge branch 'release_15.10' into release_16.01

2016-12-15 12:55:39 -05:00

genomespace

Remove remaining references to galaxy.eggs . flake8 some files in tools/ .

2015-10-26 19:29:13 +00:00

maf

Remove remaining references to galaxy.eggs . flake8 some files in tools/ .

2015-10-26 19:29:13 +00:00

meme

Specify meme requirement for fimo tool.

2012-02-02 21:29:30 -06:00

metag_tools

Migrate 22 tools from the distribution to the tool shed.

2014-05-19 13:01:46 -04:00

next_gen_conversion

Remove remaining references to galaxy.eggs . flake8 some files in tools/ .

2015-10-26 19:29:13 +00:00

ngs_simulation

Remove remaining references to galaxy.eggs . flake8 some files in tools/ .

2015-10-26 19:29:13 +00:00

phenotype_association

Update david identifier types

2016-02-09 09:54:12 +00:00

plotting

Use requirements of type="package" instead of deprecated "binary".

2015-05-15 12:43:15 +01:00

solid_tools

dos2unix of tools/ directory. Some whitespace and PEP-8 fixes.

2015-05-15 12:40:52 +01:00

sr_assembly

Use from_work_dir instead of copying output files line by line. Write velvetg output to stdout.

2014-10-28 18:45:17 +01:00

sr_mapping

Add more distribution tool citations.

2015-10-05 15:16:50 +01:00

stats

Lint fix for 15.10 to dev merge.

2015-11-09 15:33:05 +00:00

validation

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00

visualization

Add citations to a few more tools.

2015-10-05 15:12:46 +01:00