Dannon Baker 39eb262219 More fixes to 3.bam to make it valid stripped out secondary HD header and duplicated sequences chr10-16

2016-02-02 13:54:24 -05:00

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library

Fix library security functional tests.

2014-04-25 15:29:56 -04:00

users

Fix certain failing functional tests.

2014-04-16 16:13:11 -04:00

1.axt

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1.bam

Restore files that were deleted due to a tool migration, but are still used in test/functiona/test_get_data.py.

2013-11-13 10:46:38 -05:00

1.bed

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1.bed.spaces

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1.bedgraph

Enable BedGraph to be used as input to wig-to-bigwig tool.

2013-01-24 17:06:51 -05:00

1.bigbed

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1.bigwig

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1.customtrack

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1.fasta

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1.fastq

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1.fastqsanger

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1.fastqsolexa

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1.interval

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1.lav

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1.pileup

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1.RData

Add missing file from previous commit.

2015-09-23 15:10:06 +01:00

1.sam

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1.scf

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1.sff

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1.tabular

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1.txt

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1.wig

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2.bed

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2.fasta

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2.tabular

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2gen.fastq

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3.bam

More fixes to 3.bam to make it valid stripped out secondary HD header and duplicated sequences chr10-16

2016-02-02 13:54:24 -05:00

3.bed

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3.maf

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3unsorted.bam

Restore files that were deleted due to a tool migration, but are still used in test/functiona/test_get_data.py.

2013-11-13 10:46:38 -05:00

4.bed

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4.bed.bz2

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4.bed.gz

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4.bed.zip

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5.bed

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5.gff

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5.gff3

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6.bed

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7.bed

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8.bed

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9.bed

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454Score.pdf

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454Score.png

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a.tab

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a.txt

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asian_chars_1.txt

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bcf_index_metadata_test.bcf

Added test for bcf index creation.

2015-04-28 13:45:33 -04:00

bcf_index_metadata_test.txt

Added test for bcf index creation.

2015-04-28 13:45:33 -04:00

cat_wrapper_out1.bed

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filter1_in3.sam

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filter1_in5.tab

Add parameter to filtering tool to optionally skip header lines. Add test for new parameter usage as well.

2013-01-29 10:37:16 -05:00

filter1_inbad.bed

[Peter Cock] Filtering tool: Only cast used columns. Fix valid lines and skipped info lines. [Kanwei] Add new testcases to test this behavior. Fixes #537. Fixes #535

2011-05-27 10:47:17 +02:00

filter1_test1.bed

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filter1_test2.bed

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filter1_test3.sam

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filter1_test4.bed

[Peter Cock] Filtering tool: Only cast used columns. Fix valid lines and skipped info lines. [Kanwei] Add new testcases to test this behavior. Fixes #537. Fixes #535

2011-05-27 10:47:17 +02:00

filter1_test5.tab

Add parameter to filtering tool to optionally skip header lines. Add test for new parameter usage as well.

2013-01-29 10:37:16 -05:00

GRCm38mm10_chr5_34761740-34912521.fa

Moved API tests to live under test/ rather than test/functional/. Removed test for DNAse flanked genes. Added test for UCSC table browser.

2014-04-30 15:35:57 -04:00

html_file.txt

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phiX.fasta

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qualscores.qual454

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qualscores.qualsolid

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rgenetics.bed

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rgenetics.bim

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rgenetics.fam

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rgenetics.map

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rgenetics.ped

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shrimp_cs_test1.csfasta

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simple_line_alternative.txt

Rework test framework testing and tools.

2014-04-28 11:48:51 -05:00

simple_line_x2.txt

Rework test framework testing and tools.

2014-04-28 11:48:51 -05:00

simple_line_x3.txt

Rework test framework testing and tools.

2014-04-28 11:48:51 -05:00

simple_line_x5.txt

Rework test framework testing and tools.

2014-04-28 11:48:51 -05:00

simple_line.txt

Rework test framework testing and tools.

2014-04-28 11:48:51 -05:00

simple_lines_both.txt

Add framework test tool that has both data and data_collection param - with test case.

2014-05-07 15:39:03 -05:00

simple_lines_interleaved.txt

Rework test framework testing and tools.

2014-04-28 11:48:51 -05:00

tinywga.bed

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tinywga.bim

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tinywga.fam

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tinywga.map

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tinywga.ped

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tinywga.ped.space_to_tab

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