mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-24 16:30:27 +08:00
Nicola Soranzo
7fee81607c
ruff (https://github.com/charliermarsh/ruff) is a new and extremely fast Python linter, written in Rust. Ruff can be used to replace Flake8 (plus a variety of plugins), isort, pydocstyle, yesqa, eradicate, pyupgrade, and autoflake. Here ruff is added to our current linters (flake8, flake8-bugbear and isort) while we assess its reliability. I've not enabled the isort rules because many of the options we use are not implemented yet. I have instead enabled the pyupgrade rules (a tool which I run manually every few months). Also: - Fix new linting errors reported by ruff.
66 lines
2.3 KiB
INI
66 lines
2.3 KiB
INI
[tox]
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# envlist is the list of environments that are tested when `tox` is run without any option
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# hyphens in an environment name are used to delimit factors
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envlist = py37-first_startup, py37-lint, py37-lint_docstring_include_list, py37-mypy, py37-reports_startup, py37-unit, test_galaxy_packages, validate_test_tools
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skipsdist = True
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[testenv]
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commands =
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first_startup: bash .ci/first_startup.sh
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lint: ruff .
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# Once we are happy to replace flake8 with ruff, we can replace the next line with `black --check --diff`
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# (since ruff delegates to black for checking/fixing many rules).
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lint: bash .ci/flake8_wrapper.sh
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lint_docstring: bash .ci/flake8_wrapper_docstrings.sh --exclude
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lint_docstring_include_list: bash .ci/flake8_wrapper_docstrings.sh --include
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reports_startup: bash .ci/first_startup.sh reports
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mulled,unit: bash run_tests.sh -u
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# start with test here but obviously someday all of it...
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mypy: mypy test lib
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test_galaxy_packages: make generate-cwl-conformance-tests
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test_galaxy_packages: bash packages/test.sh
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allowlist_externals =
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bash
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make
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passenv =
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CI
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CONDA_EXE
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GALAXY_CONFIG_OVERRIDE_DATABASE_CONNECTION
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APP_WEBSERVER
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TERM
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setenv =
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coverage: GALAXY_TEST_COVERAGE=1
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first_startup: GALAXY_PYTHON=python
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first_startup: GALAXY_CONFIG_DATABASE_AUTO_MIGRATE=true
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py{36,37,38}-first_startup: GALAXY_VIRTUAL_ENV=.venv3
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mulled: marker=external_dependency_management
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mulled,unit: GALAXY_VIRTUAL_ENV={envdir}
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unit: GALAXY_ENABLE_BETA_COMPRESSED_GENBANK_SNIFFING=1
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unit: marker=not external_dependency_management
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check_indexes: GALAXY_SKIP_CLIENT_BUILD=1
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deps =
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coverage: coverage
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lint,lint_docstring,lint_docstring_include_list: -rlib/galaxy/dependencies/pinned-lint-requirements.txt
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mypy: -rlib/galaxy/dependencies/pinned-typecheck-requirements.txt
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mypy: -rlib/galaxy/dependencies/pinned-requirements.txt
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test_galaxy_packages: pyyaml
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unit: mock-ssh-server
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[testenv:mako_count]
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commands = bash .ci/check_mako.sh
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[testenv:test_galaxy_release]
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commands = bash test/release.sh
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[testenv:validate_test_tools]
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commands = bash .ci/validate_test_tools.sh
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[testenv:web_controller_line_count]
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commands = bash .ci/check_controller.sh
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[testenv:check_indexes]
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commands =
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bash scripts/common_startup.sh
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bash manage_db.sh init
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bash check_model.sh
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