galaxy

access_libraries.xml

Several data library improvements:

2011-01-31 16:41:03 -05:00

bed_convert.xml

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biomart_test.xml

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biomart.xml

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cbi_rice_mart.xml

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data_source.py

Switch to_json_string/from_json_string in galaxy/tools.

2014-09-09 10:06:35 -04:00

ebi_sra.xml

Change EBI SRA tool to use auto detect for format determination now that they are providing additional formats. Fixes issue seen when sending SFF files.

2013-06-26 11:57:51 -04:00

echo.py

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echo.xml

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eupathdb.xml

pdate EuPathDB datasource configuration file. Contributed by Mark Heiges.

2011-08-22 14:03:57 -04:00

fetch.py

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fly_modencode.xml

Some reworking of data_source tools and the standard data_source.py script. Remove hard-coded special-case handling of UCSC Table Browser and GBrowse datasource tools; functionality remains, but is now a part of the individual tools' XML configuration files. Auto-detect is now available by providing data_type=auto parameters.

2011-04-21 13:12:10 -04:00

flymine_test.xml

Re-add InterMine tools removed in 401ee23dcf2f70d4be0e975bb3e00a43ae1dfdd0.

2014-06-27 14:44:55 -04:00

flymine.xml

Re-add InterMine tools removed in 401ee23dcf2f70d4be0e975bb3e00a43ae1dfdd0.

2014-06-27 14:44:55 -04:00

genbank.py

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genbank.xml

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gramene_mart.xml

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hapmapmart.xml

adding hapmapmart.xml to tools/data_source

2010-11-18 10:30:27 -05:00

hbvar_filter.py

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hbvar.xml

Rewrite HbVar datasource tool.

2012-05-04 15:35:51 -04:00

import.py

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import.xml

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metabolicmine.xml

Re-add InterMine tools removed in 401ee23dcf2f70d4be0e975bb3e00a43ae1dfdd0.

2014-06-27 14:44:55 -04:00

microbial_import_code.py

Fix outdated usage of states in microbial dataset post-job hook.

2013-10-10 12:53:10 -04:00

microbial_import.py

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microbial_import.xml

Fix old wiki links.

2014-04-10 20:00:45 +02:00

modmine.xml

Re-add InterMine tools removed in 401ee23dcf2f70d4be0e975bb3e00a43ae1dfdd0.

2014-06-27 14:44:55 -04:00

mousemine.xml

Re-add InterMine tools removed in 401ee23dcf2f70d4be0e975bb3e00a43ae1dfdd0.

2014-06-27 14:44:55 -04:00

ratmine.xml

Re-add InterMine tools removed in 401ee23dcf2f70d4be0e975bb3e00a43ae1dfdd0.

2014-06-27 14:44:55 -04:00

ucsc_archaea.xml

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ucsc_filter.py

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ucsc_proxy.py

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ucsc_proxy.xml

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ucsc_tablebrowser_archaea.xml

Some reworking of data_source tools and the standard data_source.py script. Remove hard-coded special-case handling of UCSC Table Browser and GBrowse datasource tools; functionality remains, but is now a part of the individual tools' XML configuration files. Auto-detect is now available by providing data_type=auto parameters.

2011-04-21 13:12:10 -04:00

ucsc_tablebrowser_test.xml

Some reworking of data_source tools and the standard data_source.py script. Remove hard-coded special-case handling of UCSC Table Browser and GBrowse datasource tools; functionality remains, but is now a part of the individual tools' XML configuration files. Auto-detect is now available by providing data_type=auto parameters.

2011-04-21 13:12:10 -04:00

ucsc_tablebrowser.xml

Backed out changeset 48bbe32beefe which introduced a whole bunch of unintended reversions from a broken hg repository

2011-07-06 09:44:56 +10:00

ucsc_testproxy.xml

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upload.py

Switch to_json_string/from_json_string in galaxy/tools.

2014-09-09 10:06:35 -04:00

upload.xml

Hiding UUID input for upload tool

2014-08-18 16:37:30 -07:00

worm_modencode.xml

Some reworking of data_source tools and the standard data_source.py script. Remove hard-coded special-case handling of UCSC Table Browser and GBrowse datasource tools; functionality remains, but is now a part of the individual tools' XML configuration files. Auto-detect is now available by providing data_type=auto parameters.

2011-04-21 13:12:10 -04:00

wormbase_test.xml

Some reworking of data_source tools and the standard data_source.py script. Remove hard-coded special-case handling of UCSC Table Browser and GBrowse datasource tools; functionality remains, but is now a part of the individual tools' XML configuration files. Auto-detect is now available by providing data_type=auto parameters.

2011-04-21 13:12:10 -04:00

wormbase.xml

Update WormBase datasource tool to use WormBase 2.

2012-05-02 17:04:33 -04:00

yeastmine.xml

Re-add InterMine tools removed in 401ee23dcf2f70d4be0e975bb3e00a43ae1dfdd0.

2014-06-27 14:44:55 -04:00