galaxy

shared

Added apiMel3 to manual builds.

2012-02-23 13:38:01 -05:00

add_scores.loc.sample

python version of "phyloP interspecies conservation scores" tool

2011-11-30 12:05:59 -05:00

alignseq.loc.sample

Added more information to the sample .loc files, fixed a typo in extract genomic dna tool.

2008-06-30 18:02:53 +00:00

all_fasta.loc.sample

Added a sample loc file listing all fasta files and a script to generate the file given a base genome directory.

2010-11-08 00:43:02 -05:00

annotation_profiler_options.xml.sample

Update annotation profiler tool sample configuration file.

2011-07-07 12:13:49 -04:00

annotation_profiler_valid_builds.txt.sample

Adding a new parameter type drill_down. This parameter type creates a hierarchical set of checkboxes or radiobuttons.

2008-05-07 17:10:35 +00:00

bfast_indexes.loc.sample

Add BFAST Mapper tool and wrapper.

2010-08-18 16:52:06 -04:00

binned_scores.loc.sample

Added more information to the sample .loc files, fixed a typo in extract genomic dna tool.

2008-06-30 18:02:53 +00:00

blastdb_p.loc.sample

Converted several tools to data table style of loc file handling (Bowtie, BWA, Lastz, Megablast, PerM, SRMA). Cleaned up several tool XML files, removing unnecessary None parameters.

2010-11-08 00:10:13 -05:00

blastdb.loc.sample

Converted several tools to data table style of loc file handling (Bowtie, BWA, Lastz, Megablast, PerM, SRMA). Cleaned up several tool XML files, removing unnecessary None parameters.

2010-11-08 00:10:13 -05:00

bowtie_indices_color.loc.sample

Converted several tools to data table style of loc file handling (Bowtie, BWA, Lastz, Megablast, PerM, SRMA). Cleaned up several tool XML files, removing unnecessary None parameters.

2010-11-08 00:10:13 -05:00

bowtie_indices.loc.sample

Converted several tools to data table style of loc file handling (Bowtie, BWA, Lastz, Megablast, PerM, SRMA). Cleaned up several tool XML files, removing unnecessary None parameters.

2010-11-08 00:10:13 -05:00

bwa_index_color.loc.sample

Added BWA color space wrapper; fixed names of FASTQ test files to indicate data type

2011-01-12 12:13:54 -05:00

bwa_index.loc.sample

Converted several tools to data table style of loc file handling (Bowtie, BWA, Lastz, Megablast, PerM, SRMA). Cleaned up several tool XML files, removing unnecessary None parameters.

2010-11-08 00:10:13 -05:00

ccat_configurations.loc.sample

Update CCAT to version 3.0.

2011-03-16 10:41:38 -04:00

codingSnps.loc.sample

Initial checkin of Human Genome Variation tools

2010-09-14 18:20:15 -04:00

encode_datasets.loc.sample

Commenting data lines in .loc.sample tool-data files so tools will not throw exceptions.

2008-04-03 14:31:16 +00:00

faseq.loc.sample

Added more information to the sample .loc files, fixed a typo in extract genomic dna tool.

2008-06-30 18:02:53 +00:00

fastx_clipper_sequences.txt

Updating FASTX tool-set to the latest version v0.0.10

2009-09-14 17:03:17 -04:00

funDo.loc.sample

Fixed sample .loc file for FunDO tool

2010-09-16 15:29:51 -04:00

gatk_annotations.txt.sample

GATK tools will now use their own .loc file for picard indexes and will also load annotations from an external file.

2011-12-05 12:27:54 -05:00

gatk_sorted_picard_index.loc.sample

GATK tools will now use their own .loc file for picard indexes and will also load annotations from an external file.

2011-12-05 12:27:54 -05:00

gd.chrlens.loc.sample

initial version of Webb's genome diversity tools

2011-04-21 17:22:27 -04:00

gd.primers.loc.sample

initial version of Webb's genome diversity tools

2011-04-21 17:22:27 -04:00

gd.restriction_enzymes.txt.sample

initial version of Webb's genome diversity tools

2011-04-21 17:22:27 -04:00

gd.snps.loc.sample

initial version of Webb's genome diversity tools

2011-04-21 17:22:27 -04:00

gd.species.txt.sample

initial version of Webb's genome diversity tools

2011-04-21 17:22:27 -04:00

lastz_seqs.loc.sample

Converted several tools to data table style of loc file handling (Bowtie, BWA, Lastz, Megablast, PerM, SRMA). Cleaned up several tool XML files, removing unnecessary None parameters.

2010-11-08 00:10:13 -05:00

liftOver.loc.sample

Added more information to the sample .loc files, fixed a typo in extract genomic dna tool.

2008-06-30 18:02:53 +00:00

maf_index.loc.sample

Rewrite of dynamic options for select lists. There are no more 'special cases' and new filters are much easier to incorporate, as neeeded.

2008-05-29 17:38:46 +00:00

maf_pairwise.loc.sample

Rewrite of dynamic options for select lists. There are no more 'special cases' and new filters are much easier to incorporate, as neeeded.

2008-05-29 17:38:46 +00:00

microbial_data.loc.sample

Commenting data lines in .loc.sample tool-data files so tools will not throw exceptions.

2008-04-03 14:31:16 +00:00

mosaik_index.loc.sample

Initial commit of Mosaik and Freebayes.

2011-02-23 14:01:58 -05:00

ngs_sim_fasta.loc.sample

Adding NGS simulation tool

2010-11-03 13:52:52 -04:00

perm_base_index.loc.sample

Fixed inconsistency in PerM loc.sample files

2010-11-17 11:43:40 -05:00

perm_color_index.loc.sample

Fixed inconsistency in PerM loc.sample files

2010-11-17 11:43:40 -05:00

phastOdds.loc.sample

Added more information to the sample .loc files, fixed a typo in extract genomic dna tool.

2008-06-30 18:02:53 +00:00

picard_index.loc.sample

Added picard_index.loc.sample file and changed data tables so that both picard and srma tools look in picard_index.loc instead of srma_index.loc

2011-04-22 15:09:45 -04:00

quality_scores.loc.sample

Added more information to the sample .loc files, fixed a typo in extract genomic dna tool.

2008-06-30 18:02:53 +00:00

regions.loc.sample

Added more information to the sample .loc files, fixed a typo in extract genomic dna tool.

2008-06-30 18:02:53 +00:00

sam_fa_indices.loc.sample

Updated several sample index loc files to make it clearer how the actual loc files should appear

2009-10-07 15:31:18 -04:00

sequence_index_base.loc.sample

Updated several sample index loc files to make it clearer how the actual loc files should appear

2009-10-07 15:31:18 -04:00

sequence_index_color.loc.sample

Updated several sample index loc files to make it clearer how the actual loc files should appear

2009-10-07 15:31:18 -04:00

sift_db.loc.sample

Initial checkin of Human Genome Variation tools

2010-09-14 18:20:15 -04:00

srma_index.loc.sample

Added picard_index.loc.sample file and changed data tables so that both picard and srma tools look in picard_index.loc instead of srma_index.loc

2011-04-22 15:09:45 -04:00

twobit.loc.sample

Added more information to the sample .loc files, fixed a typo in extract genomic dna tool.

2008-06-30 18:02:53 +00:00