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Marius van den Beek a052f0baba Merge pull request #14714 from kxk302/idle_connection_pool_cleaner 
Idle connection pool cleaner
2022-10-18 23:46:26 +02:00
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chained_dyndest_rules
Apply black formatting.
2022-02-03 07:42:20 -05:00
cloudauthz
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
delay_rules
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mock_biotools_content/data
Parse edam operation and topic data from bio.tools if available.
2021-09-07 14:29:38 -04:00
objectstore
REduced refresh time and monitor interval so test completes more quickly
2022-10-17 16:35:35 -04:00
objectstore_selection_rules
Apply black formatting.
2022-02-03 07:42:20 -05:00
panel_views_1
Allow static panel views without explicit "items" - just start with integrated panel and apply filters.
2021-09-15 10:50:57 -04:00
resubmission_rules
Apply black formatting.
2022-02-03 07:42:20 -05:00
webdav
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__init__.py
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chained_dyndest_job_conf.xml
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conftest.py
Enable celery in API, Selenium, Integration tests
2022-05-25 19:46:47 +02:00
delay_job_conf.yml
Allow specifying useful classes of tools for mapping in job conf.
2021-07-14 13:46:56 -04:00
dockerized_job_conf.yml
Support setting per-job-environment container resolvers using the container_resolvers key in the environment config.
2021-08-17 10:28:51 -04:00
embedded_pulsar_docker_job_conf.yml
Drop more uWSGI legacy things
2022-03-15 21:32:00 +01:00
embedded_pulsar_job_conf.xml
Use remote_metadata: true when using extended metadata
2021-10-26 17:59:05 +02:00
embedded_pulsar_metadata_extended_job_conf.yml
Allow specifying useful classes of tools for mapping in job conf.
2021-07-14 13:46:56 -04:00
embedded_pulsar_metadata_job_conf.yml
Allow specifying useful classes of tools for mapping in job conf.
2021-07-14 13:46:56 -04:00
embedded_pulsar_singularity_job_conf.yml
Allow specifying useful classes of tools for mapping in job conf.
2021-07-14 13:46:56 -04:00
file_sources_conf_vault.yml
Add new secret type to user preferences that is not sent to client
2021-12-01 10:48:36 +05:30
file_sources_conf.yml
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handler_template_job_conf.xml
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io_injection_job_conf.yml
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refgenie.yml
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resubmission_default_job_conf.yml
Allow specifying useful classes of tools for mapping in job conf.
2021-07-14 13:46:56 -04:00
resubmission_dynamic_job_conf.xml
Allow specifying useful classes of tools for mapping in job conf.
2021-07-14 13:46:56 -04:00
resubmission_job_conf.yml
Allow specifying useful classes of tools for mapping in job conf.
2021-07-14 13:46:56 -04:00
resubmission_job_resource_parameters_conf.xml
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resubmission_pulsar_job_conf.xml
Allow specifying useful classes of tools for mapping in job conf.
2021-07-14 13:46:56 -04:00
resubmission_runners.py
Apply black formatting.
2022-02-03 07:42:20 -05:00
resubmission_small_memory_job_conf.xml
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resubmission_small_memory_resubmission_to_large_job_conf.xml
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resubmission_tool_detected_always_error_job_conf.xml
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resubmission_tool_detected_resubmit_job_conf.xml
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sets_tmp_dir_expression_job_conf.xml
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sets_tmp_dir_to_true_job_conf.xml
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simple_job_conf.xml
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singularity_job_conf.yml
Support setting per-job-environment container resolvers using the container_resolvers key in the environment config.
2021-08-17 10:28:51 -04:00
test_async_downloads.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_celery_tasks.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_chained_dynamic_destinations.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_change_datatype_with_store_by_id.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_cli_runners.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_coexecution.py
Pulsar infrastructure improvements for TES execution and MQ-less Kubernetes.
2022-10-16 09:56:58 +02:00
test_config_options_users.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_config_schema.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_configuration_decode.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_containerized_jobs.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_data_manager_refgenie.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_data_manager.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_datatype_upload.py
Misc test fixes
2022-09-27 03:34:55 +01:00
test_default_permissions.py
Misc test fixes
2022-09-27 03:34:55 +01:00
test_dynamic_edam_loading.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_edam_toolbox.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_extended_metadata_mapping.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_extended_metadata_outputs_to_working_directory.py
Apply black formatting.
2022-02-03 07:42:20 -05:00
test_extended_metadata.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_fail_job_tool_unavailable.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_fluent_metrics.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_flush_per_n_datasets.py
Use celery in more integration tests
2022-05-26 12:48:44 +02:00
test_galaxy_interactor.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_genomes.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_handler_assignment_methods.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_history_import_export.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_interactivetools_api.py
Pulsar infrastructure improvements for TES execution and MQ-less Kubernetes.
2022-10-16 09:56:58 +02:00
test_job_environments.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_job_files.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_job_outputs_to_working_directory.py
Use celery in more integration tests
2022-05-26 12:48:44 +02:00
test_job_recovery.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_job_resubmission.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_kubernetes_runner.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_local_job_cancellation.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_materialize_dataset_instance_tasks.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_max_discovered_files.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_model_store_scripts.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_page_revision_json_encoding.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_panel_views.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_pulsar_embedded_containers.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_pulsar_embedded_copy_working.py
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test_pulsar_embedded_extended_metadata.py
Apply black formatting.
2022-02-03 07:42:20 -05:00
test_pulsar_embedded_mq.py
Apply black formatting.
2022-02-03 07:42:20 -05:00
test_pulsar_embedded_remote_metadata.py
Apply black formatting.
2022-02-03 07:42:20 -05:00
test_pulsar_embedded.py
Use celery in more integration tests
2022-05-26 12:48:44 +02:00
test_quota.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_remote_files_histories.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_remote_files_posix.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_remote_files.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_repository_operations.py
Extend tool shed install testing to include index API.
2022-10-10 11:19:18 -04:00
test_resolvers.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_save_job_id_on_datasets.py
Apply black formatting.
2022-02-03 07:42:20 -05:00
test_scripts.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_shed_tool_tests.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_tool_data_delete.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_upload_configuration_options.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_vault_extra_prefs.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_vault_file_source.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_web_framework_config.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_webdav.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_work_queue_put_failure.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_workflow_handler_configuration.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_workflow_invocation.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_workflow_refactoring.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_workflow_scheduling_options.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_workflow_sync.py
Replace `unittest.TestCase` with pytest-based partial re-implementation
2022-09-27 03:34:58 +01:00
test_workflow_tasks.py
Validate BioCompute Objects against schema in tests
2022-10-14 12:20:24 +02:00
user_preferences_extra_conf.yml
Change vault api test case to integration test case and add missing conditional requirements
2021-12-20 18:23:00 +05:30
vault_conf.yml
Make sure filesources can access user level and app level vaults
2021-11-28 06:56:35 +05:30
workflow_handler_configuration_job_conf.xml
…