mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-24 16:30:27 +08:00
Nicola Soranzo
8cdca0f343
introduced in https://github.com/galaxyproject/galaxy/pull/18003 . In particular, when using requests in the tests to connect to Galaxy or the ToolShed it's not needed to use the modified headers. Also: - Move some imports after conditional imports. - Fix type annotations in `lib/tool_shed/test/base/populators.py` - Fix typo bug in `test/unit/util/test_get_url.py`
51 lines
1.4 KiB
Python
Executable File
51 lines
1.4 KiB
Python
Executable File
#!/usr/bin/env python
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"""
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Upload a file to the desired history.
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"""
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import json
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import os
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import sys
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import requests
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def upload_file(base_url, api_key, history_id, filepath, **kwargs):
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full_url = base_url + "/api/tools"
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payload = {
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"key": api_key,
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"tool_id": "upload1",
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"history_id": history_id,
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}
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inputs = {
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"files_0|NAME": kwargs.get("filename", os.path.basename(filepath)),
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"files_0|type": "upload_dataset",
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# TODO: the following doesn't work with tools.py
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"dbkey": "?",
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"file_type": kwargs.get("file_type", "auto"),
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"ajax_upload": "true",
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}
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payload["inputs"] = json.dumps(inputs)
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response = None
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with open(filepath, "rb") as file_to_upload:
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files = {"files_0|file_data": file_to_upload}
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response = requests.post(full_url, data=payload, files=files)
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return response.json()
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if __name__ == "__main__":
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if len(sys.argv) < 5:
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print(
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"history_upload.py <api key> <galaxy base url> <history id> <filepath to upload>\n"
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" (where galaxy base url is just the root url where your Galaxy is served; e.g. 'localhost:8080')"
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)
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sys.exit(1)
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api_key, base_url, history_id, filepath = sys.argv[1:5]
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kwargs = dict([kwarg.split("=", 1) for kwarg in sys.argv[5:]])
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response = upload_file(base_url, api_key, history_id, filepath, **kwargs)
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print(response, file=sys.stderr)
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