Nicola SoranzoandMarius van den Beek 4b46c898a7 Add comment ...

Co-authored-by: Marius van den Beek <m.vandenbeek@gmail.com>

2022-01-29 13:00:33 +00:00

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chained_dyndest_rules

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cloudauthz

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delay_rules

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mock_biotools_content/data

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objectstore

Clear the cache before fetching a file from irods object store, to verify file is fetched from the object store, not from the cache

2022-01-18 09:51:56 -05:00

objectstore_selection_rules

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panel_views_1

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resubmission_rules

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webdav

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__init__.py

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chained_dyndest_job_conf.xml

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conftest.py

Shut down driver instance after collection

2021-10-19 13:27:15 +02:00

delay_job_conf.yml

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dockerized_job_conf.yml

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embedded_pulsar_docker_job_conf.yml

Use remote_metadata: true when using extended metadata

2021-10-26 17:59:05 +02:00

embedded_pulsar_job_conf.xml

Use remote_metadata: true when using extended metadata

2021-10-26 17:59:05 +02:00

embedded_pulsar_metadata_extended_job_conf.yml

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embedded_pulsar_metadata_job_conf.yml

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embedded_pulsar_singularity_job_conf.yml

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file_sources_conf_vault.yml

Add new secret type to user preferences that is not sent to client

2021-12-01 10:48:36 +05:30

file_sources_conf.yml

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handler_template_job_conf.xml

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io_injection_job_conf.yml

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refgenie.yml

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resubmission_default_job_conf.yml

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resubmission_dynamic_job_conf.xml

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resubmission_job_conf.yml

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resubmission_job_resource_parameters_conf.xml

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resubmission_pulsar_job_conf.xml

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resubmission_runners.py

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resubmission_small_memory_job_conf.xml

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resubmission_small_memory_resubmission_to_large_job_conf.xml

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resubmission_tool_detected_always_error_job_conf.xml

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resubmission_tool_detected_resubmit_job_conf.xml

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sets_tmp_dir_expression_job_conf.xml

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sets_tmp_dir_to_true_job_conf.xml

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simple_job_conf.xml

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singularity_job_conf.yml

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test_celery_tasks.py

Allow passing Pydantic models as arguments to Celery tasks.

2021-10-13 22:32:36 -04:00

test_chained_dynamic_destinations.py

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test_change_datatype_with_store_by_id.py

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test_cli_runners.py

Add comment

2022-01-29 13:00:33 +00:00

test_config_defaults.py

Add vault conditional dependencies

2021-11-18 01:12:23 +05:30

test_config_options_users.py

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test_config_schema.py

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test_configuration_decode.py

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test_containerized_jobs.py

Check that jobs don't inherit env variables from Galaxy

2021-12-06 17:43:22 +00:00

test_data_manager_refgenie.py

Merge branch 'release_21.09' into dev

2022-01-21 16:38:36 +01:00

test_data_manager.py

Merge branch 'release_21.09' into dev

2022-01-21 16:38:36 +01:00

test_datatype_upload.py

Clear the cache before fetching a file from irods object store, to verify file is fetched from the object store, not from the cache

2022-01-18 09:51:56 -05:00

test_default_permissions.py

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test_dynamic_edam_loading.py

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test_edam_toolbox.py

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test_extended_metadata_mapping.py

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test_extended_metadata_outputs_to_working_directory.py

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test_extended_metadata.py

Make tool_evaluation_strategy configurable on app and destination level

2021-11-30 12:27:14 +01:00

test_fail_job_tool_unavailable.py

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test_fluent_metrics.py

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test_flush_per_n_datasets.py

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test_galaxy_interactor.py

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test_genomes.py

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test_handler_assignment_methods.py

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test_history_import_export.py

Disable remote evaluation for JEHA history export jobs

2021-11-30 10:58:40 +01:00

test_interactivetools_api.py

Split run_tool_raw() out of BaseDatasetPopulator.run_tool()

2021-11-27 03:14:52 +00:00

test_job_environments.py

Update pulsar-galaxy-lib to 0.14.13 and enable assert for EmbeddedPulsarDefaultJobEnvironmentIntegrationTestCase

2021-12-06 17:45:58 +00:00

test_job_outputs_to_working_directory.py

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test_job_recovery.py

Split run_tool_raw() out of BaseDatasetPopulator.run_tool()

2021-11-27 03:14:52 +00:00

test_job_resubmission.py

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test_kubernetes_runner.py

Split run_tool_raw() out of BaseDatasetPopulator.run_tool()

2021-11-27 03:14:52 +00:00

test_kubernetes_staging.py

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test_local_job_cancellation.py

Split run_tool_raw() out of BaseDatasetPopulator.run_tool()

2021-11-27 03:14:52 +00:00

test_max_discovered_files.py

Implement max_discovered_files

2022-01-18 11:49:00 +01:00

test_mules_as_job_handlers.py

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test_page_revision_json_encoding.py

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test_panel_views.py

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test_pulsar_embedded_containers.py

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test_pulsar_embedded_copy_working.py

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test_pulsar_embedded_extended_metadata.py

Fix from work dir glob with extended metadata

2021-10-31 13:06:41 +01:00

test_pulsar_embedded_mq.py

Use remote_metadata in pulsar_embedded_mq test

2021-10-26 17:59:07 +02:00

test_pulsar_embedded_remote_metadata.py

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test_pulsar_embedded.py

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test_quota.py

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test_remote_files_histories.py

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test_remote_files_posix.py

Type fixes: integration_setup.py

2021-10-11 16:32:29 -04:00

test_remote_files.py

Make tool_evaluation_strategy configurable on app and destination level

2021-11-30 12:27:14 +01:00

test_repository_operations.py

Fix tool id not getting updated on tool update

2022-01-19 14:46:31 +01:00

test_resolvers.py

Remove unnecessary list creations

2021-11-29 16:33:05 +00:00

test_save_job_id_on_datasets.py

Make sure test driver shuts down on failure

2021-10-26 17:59:04 +02:00

test_scripts.py

New pyupgrade fixes

2021-10-24 12:10:34 +01:00

test_shed_tool_tests.py

Fix tool id not getting updated on tool update

2022-01-19 14:46:31 +01:00

test_tool_data_delete.py

New pyupgrade fixes

2021-10-24 12:10:34 +01:00

test_upload_configuration_options.py

improve type hints for test/integration/test_upload_configuration_options.py.

2021-11-12 19:00:33 +01:00

test_vault_extra_prefs.py

Change vault api test case to integration test case and add missing conditional requirements

2021-12-20 18:23:00 +05:30

test_vault_file_source.py

Add file upload test to vault

2021-12-20 18:00:53 +05:30

test_web_framework_config.py

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test_webdav.py

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test_work_queue_put_failure.py

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test_workflow_handler_configuration.py

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test_workflow_refactoring.py

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test_workflow_scheduling_options.py

Fix test_workflow_scheduling_options

2022-01-05 13:31:58 +01:00

test_workflow_sync.py

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user_preferences_extra_conf.yml

Change vault api test case to integration test case and add missing conditional requirements

2021-12-20 18:23:00 +05:30

vault_conf.yml

Make sure filesources can access user level and app level vaults

2021-11-28 06:56:35 +05:30

workflow_handler_configuration_job_conf.xml

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