mvdbeek 10f1bb5459 Create a BaseFastq class and add test tools ...

Having a BaseFastq class allows Fastq and FastqGz classes to inherit from
BaseFastq. FastqGz is therfor not a Fastq datatype and goes through the
converter.

Also add 2 tools to demonstrate that compressed fastq will be converted to
uncompressed fastq if the tool specifies `format="fastq"`, while
`format="fastq.gz"` leaves files compressed.

The tool test can be run with:
```
planemo test --galaxy_root .  test/functional/tools/compressed_fastq_no_conversion.xml
planemo test --galaxy_root .  test/functional/tools/compressed_fastq_conversion.xml
```

Note that fastq conversion appears to required a galaxy user session, and
planemo testing fails. Interactive testing with `planemo serve` is not affected
and works fine.

2016-11-11 16:13:18 +01:00

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