mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-10-16 15:45:04 +08:00
12939 lines
2.0 MiB
Plaintext
12939 lines
2.0 MiB
Plaintext
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{ name = "galaxy-web-apps", editable = "packages/web_apps" },
|
|
{ name = "pytest" },
|
|
{ name = "pytest", marker = "extra == 'test'" },
|
|
]
|
|
provides-extras = ["test"]
|
|
|
|
[[package]]
|
|
name = "galaxy-test-selenium"
|
|
version = "26.2.0rc1"
|
|
source = { editable = "packages/test_selenium" }
|
|
dependencies = [
|
|
{ name = "galaxy-data" },
|
|
{ name = "galaxy-selenium" },
|
|
{ name = "galaxy-test-base" },
|
|
{ name = "galaxy-tool-util" },
|
|
{ name = "galaxy-util" },
|
|
{ name = "gxformat2" },
|
|
{ name = "pytest" },
|
|
{ name = "pyyaml" },
|
|
{ name = "requests" },
|
|
{ name = "selenium" },
|
|
]
|
|
|
|
[package.optional-dependencies]
|
|
driver = [
|
|
{ name = "galaxy-test-driver" },
|
|
]
|
|
test = [
|
|
{ name = "pytest" },
|
|
]
|
|
|
|
[package.metadata]
|
|
requires-dist = [
|
|
{ name = "galaxy-data", editable = "packages/data" },
|
|
{ name = "galaxy-selenium", editable = "packages/selenium" },
|
|
{ name = "galaxy-test-base", editable = "packages/test_base" },
|
|
{ name = "galaxy-test-driver", marker = "extra == 'driver'", editable = "packages/test_driver" },
|
|
{ name = "galaxy-tool-util", editable = "packages/tool_util" },
|
|
{ name = "galaxy-util", editable = "packages/util" },
|
|
{ name = "gxformat2", specifier = ">=0.27.0" },
|
|
{ name = "pytest" },
|
|
{ name = "pytest", marker = "extra == 'test'" },
|
|
{ name = "pyyaml" },
|
|
{ name = "requests" },
|
|
{ name = "selenium", specifier = "!=4.11.0,!=4.11.1,!=4.11.2" },
|
|
]
|
|
provides-extras = ["driver", "test"]
|
|
|
|
[[package]]
|
|
name = "galaxy-tool-shed"
|
|
version = "26.2.0rc1"
|
|
source = { editable = "packages/tool_shed" }
|
|
dependencies = [
|
|
{ name = "a2wsgi" },
|
|
{ name = "alembic" },
|
|
{ name = "fastapi" },
|
|
{ name = "galaxy-app" },
|
|
{ name = "galaxy-auth" },
|
|
{ name = "galaxy-config" },
|
|
{ name = "galaxy-data" },
|
|
{ name = "galaxy-util", extra = ["image-util"] },
|
|
{ name = "galaxy-web-apps" },
|
|
{ name = "galaxy-web-framework" },
|
|
{ name = "galaxy-web-stack" },
|
|
{ name = "mako" },
|
|
{ name = "markupsafe" },
|
|
{ name = "mercurial" },
|
|
{ name = "paste" },
|
|
{ name = "pydantic" },
|
|
{ name = "routes" },
|
|
{ name = "slowapi" },
|
|
{ name = "sqlalchemy" },
|
|
{ name = "starlette" },
|
|
{ name = "starlette-context" },
|
|
{ name = "typing-extensions" },
|
|
{ name = "webob" },
|
|
{ name = "whoosh" },
|
|
]
|
|
|
|
[package.optional-dependencies]
|
|
test = [
|
|
{ name = "galaxy-test-base" },
|
|
{ name = "galaxy-test-driver" },
|
|
{ name = "playwright" },
|
|
{ name = "pytest" },
|
|
{ name = "pytest-playwright" },
|
|
]
|
|
|
|
[package.metadata]
|
|
requires-dist = [
|
|
{ name = "a2wsgi" },
|
|
{ name = "alembic" },
|
|
{ name = "fastapi", specifier = ">=0.137.2" },
|
|
{ name = "galaxy-app", editable = "packages/app" },
|
|
{ name = "galaxy-auth", editable = "packages/auth" },
|
|
{ name = "galaxy-config", editable = "packages/config" },
|
|
{ name = "galaxy-data", editable = "packages/data" },
|
|
{ name = "galaxy-test-base", marker = "extra == 'test'", editable = "packages/test_base" },
|
|
{ name = "galaxy-test-driver", marker = "extra == 'test'", editable = "packages/test_driver" },
|
|
{ name = "galaxy-util", extras = ["image-util"], editable = "packages/util" },
|
|
{ name = "galaxy-web-apps", editable = "packages/web_apps" },
|
|
{ name = "galaxy-web-framework", editable = "packages/web_framework" },
|
|
{ name = "galaxy-web-stack", editable = "packages/web_stack" },
|
|
{ name = "mako" },
|
|
{ name = "markupsafe" },
|
|
{ name = "mercurial", specifier = ">=7.2" },
|
|
{ name = "paste" },
|
|
{ name = "playwright", marker = "extra == 'test'" },
|
|
{ name = "pydantic", specifier = ">=2.7.4" },
|
|
{ name = "pytest", marker = "extra == 'test'" },
|
|
{ name = "pytest-playwright", marker = "extra == 'test'" },
|
|
{ name = "routes" },
|
|
{ name = "slowapi" },
|
|
{ name = "sqlalchemy", specifier = ">=2.0.37,!=2.0.41,<2.1" },
|
|
{ name = "starlette", specifier = ">=1.0.1" },
|
|
{ name = "starlette-context" },
|
|
{ name = "typing-extensions" },
|
|
{ name = "webob" },
|
|
{ name = "whoosh" },
|
|
]
|
|
provides-extras = ["test"]
|
|
|
|
[[package]]
|
|
name = "galaxy-tool-shed-schema"
|
|
version = "26.2.0rc1"
|
|
source = { editable = "packages/tool_shed_schema" }
|
|
dependencies = [
|
|
{ name = "galaxy-tool-util-models" },
|
|
{ name = "pydantic" },
|
|
{ name = "typing-extensions" },
|
|
]
|
|
|
|
[package.optional-dependencies]
|
|
test = [
|
|
{ name = "pytest" },
|
|
]
|
|
|
|
[package.metadata]
|
|
requires-dist = [
|
|
{ name = "galaxy-tool-util-models", editable = "packages/tool_util_models" },
|
|
{ name = "pydantic", specifier = ">=2.7.4" },
|
|
{ name = "pytest", marker = "extra == 'test'" },
|
|
{ name = "typing-extensions" },
|
|
]
|
|
provides-extras = ["test"]
|
|
|
|
[[package]]
|
|
name = "galaxy-tool-util"
|
|
version = "26.2.0rc1"
|
|
source = { editable = "packages/tool_util" }
|
|
dependencies = [
|
|
{ name = "conda-package-streaming" },
|
|
{ name = "galaxy-tool-util-models" },
|
|
{ name = "galaxy-util", extra = ["image-util", "template"] },
|
|
{ name = "lxml", version = "6.1.2", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.15'" },
|
|
{ name = "lxml", version = "6.1.3", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.15'" },
|
|
{ name = "markupsafe" },
|
|
{ name = "packaging" },
|
|
{ name = "pydantic" },
|
|
{ name = "pyyaml" },
|
|
{ name = "regex" },
|
|
{ name = "requests" },
|
|
{ name = "sortedcontainers" },
|
|
{ name = "typing-extensions" },
|
|
]
|
|
|
|
[package.optional-dependencies]
|
|
cwl = [
|
|
{ name = "cwl-utils" },
|
|
{ name = "cwltool" },
|
|
]
|
|
edam = [
|
|
{ name = "edam-ontology" },
|
|
]
|
|
extended-assertions = [
|
|
{ name = "numpy", version = "2.2.6", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.11'" },
|
|
{ name = "numpy", version = "2.4.6", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version == '3.11.*'" },
|
|
{ name = "numpy", version = "2.5.3", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.12'" },
|
|
{ name = "pillow" },
|
|
{ name = "pysam" },
|
|
{ name = "tifffile", version = "2025.5.10", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.11'" },
|
|
{ name = "tifffile", version = "2026.3.3", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version == '3.11.*'" },
|
|
{ name = "tifffile", version = "2026.9.20", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.12'" },
|
|
]
|
|
mulled = [
|
|
{ name = "jinja2" },
|
|
{ name = "whoosh" },
|
|
]
|
|
test = [
|
|
{ name = "beaker" },
|
|
{ name = "jsonschema" },
|
|
{ name = "pytest" },
|
|
{ name = "pytest-mock" },
|
|
{ name = "responses" },
|
|
{ name = "watchdog" },
|
|
]
|
|
|
|
[package.metadata]
|
|
requires-dist = [
|
|
{ name = "beaker", marker = "extra == 'test'" },
|
|
{ name = "conda-package-streaming" },
|
|
{ name = "cwl-utils", marker = "extra == 'cwl'", specifier = "!=0.44" },
|
|
{ name = "cwltool", marker = "extra == 'cwl'", specifier = ">=3.1.20230624081518" },
|
|
{ name = "edam-ontology", marker = "extra == 'edam'" },
|
|
{ name = "galaxy-tool-util-models", editable = "packages/tool_util_models" },
|
|
{ name = "galaxy-util", extras = ["template", "image-util"], editable = "packages/util" },
|
|
{ name = "jinja2", marker = "extra == 'mulled'" },
|
|
{ name = "jsonschema", marker = "extra == 'test'" },
|
|
{ name = "lxml", specifier = "!=4.2.2" },
|
|
{ name = "markupsafe" },
|
|
{ name = "numpy", marker = "extra == 'extended-assertions'" },
|
|
{ name = "packaging" },
|
|
{ name = "pillow", marker = "extra == 'extended-assertions'" },
|
|
{ name = "pydantic", specifier = ">=2.7.4" },
|
|
{ name = "pysam", marker = "extra == 'extended-assertions'" },
|
|
{ name = "pytest", marker = "extra == 'test'" },
|
|
{ name = "pytest-mock", marker = "extra == 'test'" },
|
|
{ name = "pyyaml" },
|
|
{ name = "regex" },
|
|
{ name = "requests" },
|
|
{ name = "responses", marker = "extra == 'test'" },
|
|
{ name = "sortedcontainers" },
|
|
{ name = "tifffile", marker = "extra == 'extended-assertions'" },
|
|
{ name = "typing-extensions" },
|
|
{ name = "watchdog", marker = "extra == 'test'" },
|
|
{ name = "whoosh", marker = "extra == 'mulled'" },
|
|
]
|
|
provides-extras = ["cwl", "mulled", "edam", "extended-assertions", "test"]
|
|
|
|
[[package]]
|
|
name = "galaxy-tool-util-models"
|
|
version = "26.2.0rc1"
|
|
source = { editable = "packages/tool_util_models" }
|
|
dependencies = [
|
|
{ name = "pydantic" },
|
|
{ name = "pydantic-extra-types" },
|
|
{ name = "regex" },
|
|
{ name = "typing-extensions" },
|
|
]
|
|
|
|
[package.optional-dependencies]
|
|
test = [
|
|
{ name = "pytest" },
|
|
]
|
|
|
|
[package.metadata]
|
|
requires-dist = [
|
|
{ name = "pydantic", specifier = ">=2.7.4" },
|
|
{ name = "pydantic-extra-types" },
|
|
{ name = "pytest", marker = "extra == 'test'" },
|
|
{ name = "regex" },
|
|
{ name = "typing-extensions", specifier = ">=4.13" },
|
|
]
|
|
provides-extras = ["test"]
|
|
|
|
[[package]]
|
|
name = "galaxy-tours"
|
|
version = "26.2.0rc1"
|
|
source = { editable = "packages/tours" }
|
|
dependencies = [
|
|
{ name = "galaxy-navigation" },
|
|
{ name = "galaxy-schema" },
|
|
{ name = "galaxy-util" },
|
|
{ name = "pydantic" },
|
|
{ name = "pyyaml" },
|
|
]
|
|
|
|
[package.optional-dependencies]
|
|
test = [
|
|
{ name = "pytest" },
|
|
]
|
|
|
|
[package.metadata]
|
|
requires-dist = [
|
|
{ name = "galaxy-navigation", editable = "packages/navigation" },
|
|
{ name = "galaxy-schema", editable = "packages/schema" },
|
|
{ name = "galaxy-util", editable = "packages/util" },
|
|
{ name = "pydantic", specifier = ">=2.7.4" },
|
|
{ name = "pytest", marker = "extra == 'test'" },
|
|
{ name = "pyyaml" },
|
|
]
|
|
provides-extras = ["test"]
|
|
|
|
[[package]]
|
|
name = "galaxy-util"
|
|
version = "26.2.0rc1"
|
|
source = { editable = "packages/util" }
|
|
dependencies = [
|
|
{ name = "bleach" },
|
|
{ name = "boltons" },
|
|
{ name = "docutils", version = "0.21.2", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.11'" },
|
|
{ name = "docutils", version = "0.22.4", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.11'" },
|
|
{ name = "importlib-resources", marker = "python_full_version < '3.12'" },
|
|
{ name = "packaging" },
|
|
{ name = "pyparsing" },
|
|
{ name = "pyyaml" },
|
|
{ name = "requests" },
|
|
{ name = "typing-extensions" },
|
|
{ name = "zipstream-new" },
|
|
]
|
|
|
|
[package.optional-dependencies]
|
|
config-template = [
|
|
{ name = "galaxy-tool-util-models" },
|
|
{ name = "jinja2" },
|
|
{ name = "pydantic" },
|
|
]
|
|
image-util = [
|
|
{ name = "pillow" },
|
|
]
|
|
jstree = [
|
|
{ name = "dictobj" },
|
|
]
|
|
template = [
|
|
{ name = "ct3" },
|
|
{ name = "fissix", marker = "python_full_version >= '3.13'" },
|
|
{ name = "future" },
|
|
]
|
|
test = [
|
|
{ name = "pytest" },
|
|
{ name = "pytest-httpserver" },
|
|
{ name = "responses" },
|
|
{ name = "watchdog" },
|
|
{ name = "werkzeug" },
|
|
]
|
|
|
|
[package.metadata]
|
|
requires-dist = [
|
|
{ name = "bleach" },
|
|
{ name = "boltons" },
|
|
{ name = "ct3", marker = "extra == 'template'", specifier = ">=3.3.3" },
|
|
{ name = "dictobj", marker = "extra == 'jstree'" },
|
|
{ name = "docutils", specifier = "!=0.17,!=0.17.1" },
|
|
{ name = "fissix", marker = "python_full_version >= '3.13' and extra == 'template'" },
|
|
{ name = "future", marker = "extra == 'template'", specifier = ">=1.0.0" },
|
|
{ name = "galaxy-tool-util-models", marker = "extra == 'config-template'", editable = "packages/tool_util_models" },
|
|
{ name = "importlib-resources", marker = "python_full_version < '3.12'", specifier = ">=5.10.0" },
|
|
{ name = "jinja2", marker = "extra == 'config-template'" },
|
|
{ name = "packaging" },
|
|
{ name = "pillow", marker = "extra == 'image-util'" },
|
|
{ name = "pydantic", marker = "extra == 'config-template'", specifier = ">=2.7.4" },
|
|
{ name = "pyparsing", specifier = ">=3.0.0" },
|
|
{ name = "pytest", marker = "extra == 'test'" },
|
|
{ name = "pytest-httpserver", marker = "extra == 'test'" },
|
|
{ name = "pyyaml" },
|
|
{ name = "requests" },
|
|
{ name = "responses", marker = "extra == 'test'" },
|
|
{ name = "typing-extensions" },
|
|
{ name = "watchdog", marker = "extra == 'test'" },
|
|
{ name = "werkzeug", marker = "extra == 'test'" },
|
|
{ name = "zipstream-new" },
|
|
]
|
|
provides-extras = ["image-util", "jstree", "template", "config-template", "test"]
|
|
|
|
[[package]]
|
|
name = "galaxy-web-apps"
|
|
version = "26.2.0rc1"
|
|
source = { editable = "packages/web_apps" }
|
|
dependencies = [
|
|
{ name = "a2wsgi" },
|
|
{ name = "apispec" },
|
|
{ name = "babel" },
|
|
{ name = "ct3" },
|
|
{ name = "fastapi" },
|
|
{ name = "fastmcp" },
|
|
{ name = "galaxy-app" },
|
|
{ name = "galaxy-data" },
|
|
{ name = "galaxy-job-execution" },
|
|
{ name = "galaxy-tool-util" },
|
|
{ name = "galaxy-util", extra = ["jstree", "template"] },
|
|
{ name = "galaxy-web-framework" },
|
|
{ name = "galaxy-web-stack" },
|
|
{ name = "gunicorn" },
|
|
{ name = "gxformat2" },
|
|
{ name = "httpx" },
|
|
{ name = "mako" },
|
|
{ name = "markupsafe" },
|
|
{ name = "paste" },
|
|
{ name = "pydantic" },
|
|
{ name = "pyjwt" },
|
|
{ name = "python-dateutil" },
|
|
{ name = "python-multipart" },
|
|
{ name = "pyyaml" },
|
|
{ name = "requests" },
|
|
{ name = "routes" },
|
|
{ name = "slowapi" },
|
|
{ name = "sqlalchemy" },
|
|
{ name = "starlette" },
|
|
{ name = "starlette-context" },
|
|
{ name = "tuspyserver" },
|
|
{ name = "typing-extensions" },
|
|
{ name = "uvicorn" },
|
|
{ name = "uvloop" },
|
|
{ name = "webob" },
|
|
]
|
|
|
|
[package.optional-dependencies]
|
|
test = [
|
|
{ name = "httpx" },
|
|
{ name = "pytest" },
|
|
{ name = "pytest-asyncio" },
|
|
]
|
|
|
|
[package.metadata]
|
|
requires-dist = [
|
|
{ name = "a2wsgi" },
|
|
{ name = "apispec" },
|
|
{ name = "babel" },
|
|
{ name = "ct3", specifier = ">=3.3.3" },
|
|
{ name = "fastapi", specifier = ">=0.137.2" },
|
|
{ name = "fastmcp", specifier = ">=2.13.0" },
|
|
{ name = "galaxy-app", editable = "packages/app" },
|
|
{ name = "galaxy-data", editable = "packages/data" },
|
|
{ name = "galaxy-job-execution", editable = "packages/job_execution" },
|
|
{ name = "galaxy-tool-util", editable = "packages/tool_util" },
|
|
{ name = "galaxy-util", extras = ["jstree", "template"], editable = "packages/util" },
|
|
{ name = "galaxy-web-framework", editable = "packages/web_framework" },
|
|
{ name = "galaxy-web-stack", editable = "packages/web_stack" },
|
|
{ name = "gunicorn", specifier = "!=25.1.0" },
|
|
{ name = "gxformat2", specifier = ">=0.27.0" },
|
|
{ name = "httpx" },
|
|
{ name = "httpx", marker = "extra == 'test'" },
|
|
{ name = "mako" },
|
|
{ name = "markupsafe" },
|
|
{ name = "paste" },
|
|
{ name = "pydantic", specifier = ">=2.7.4" },
|
|
{ name = "pyjwt" },
|
|
{ name = "pytest", marker = "extra == 'test'" },
|
|
{ name = "pytest-asyncio", marker = "extra == 'test'" },
|
|
{ name = "python-dateutil" },
|
|
{ name = "python-multipart" },
|
|
{ name = "pyyaml" },
|
|
{ name = "requests" },
|
|
{ name = "routes" },
|
|
{ name = "slowapi" },
|
|
{ name = "sqlalchemy", specifier = ">=2.0.37,!=2.0.41,<2.1" },
|
|
{ name = "starlette", specifier = ">=1.0.1" },
|
|
{ name = "starlette-context" },
|
|
{ name = "tuspyserver" },
|
|
{ name = "typing-extensions" },
|
|
{ name = "uvicorn" },
|
|
{ name = "uvloop", specifier = ">=0.21.0" },
|
|
{ name = "webob", specifier = ">=1.8.9" },
|
|
]
|
|
provides-extras = ["test"]
|
|
|
|
[[package]]
|
|
name = "galaxy-web-client"
|
|
version = "26.2.0rc1"
|
|
source = { editable = "packages/web_client" }
|
|
|
|
[package.optional-dependencies]
|
|
test = [
|
|
{ name = "pytest" },
|
|
]
|
|
|
|
[package.metadata]
|
|
requires-dist = [{ name = "pytest", marker = "extra == 'test'" }]
|
|
provides-extras = ["test"]
|
|
|
|
[[package]]
|
|
name = "galaxy-web-framework"
|
|
version = "26.2.0rc1"
|
|
source = { editable = "packages/web_framework" }
|
|
dependencies = [
|
|
{ name = "babel" },
|
|
{ name = "galaxy-data" },
|
|
{ name = "galaxy-util" },
|
|
{ name = "markupsafe" },
|
|
{ name = "paste" },
|
|
{ name = "pydantic" },
|
|
{ name = "requests" },
|
|
{ name = "routes" },
|
|
{ name = "sqlalchemy" },
|
|
{ name = "starlette" },
|
|
{ name = "webob" },
|
|
]
|
|
|
|
[package.optional-dependencies]
|
|
test = [
|
|
{ name = "pytest" },
|
|
]
|
|
|
|
[package.metadata]
|
|
requires-dist = [
|
|
{ name = "babel" },
|
|
{ name = "galaxy-data", editable = "packages/data" },
|
|
{ name = "galaxy-util", editable = "packages/util" },
|
|
{ name = "markupsafe" },
|
|
{ name = "paste" },
|
|
{ name = "pydantic", specifier = ">=2.7.4" },
|
|
{ name = "pytest", marker = "extra == 'test'" },
|
|
{ name = "requests" },
|
|
{ name = "routes" },
|
|
{ name = "sqlalchemy", specifier = ">=2.0.37,!=2.0.41,<2.1" },
|
|
{ name = "starlette" },
|
|
{ name = "webob" },
|
|
]
|
|
provides-extras = ["test"]
|
|
|
|
[[package]]
|
|
name = "galaxy-web-stack"
|
|
version = "26.2.0rc1"
|
|
source = { editable = "packages/web_stack" }
|
|
dependencies = [
|
|
{ name = "galaxy-data" },
|
|
{ name = "galaxy-util" },
|
|
{ name = "sqlalchemy" },
|
|
]
|
|
|
|
[package.optional-dependencies]
|
|
test = [
|
|
{ name = "gunicorn" },
|
|
{ name = "pytest" },
|
|
]
|
|
|
|
[package.metadata]
|
|
requires-dist = [
|
|
{ name = "galaxy-data", editable = "packages/data" },
|
|
{ name = "galaxy-util", editable = "packages/util" },
|
|
{ name = "gunicorn", marker = "extra == 'test'", specifier = "!=25.1.0" },
|
|
{ name = "pytest", marker = "extra == 'test'" },
|
|
{ name = "sqlalchemy", specifier = ">=2.0.37,!=2.0.41,<2.1" },
|
|
]
|
|
provides-extras = ["test"]
|
|
|
|
[[package]]
|
|
name = "galaxy-workspace"
|
|
version = "0.1.0"
|
|
source = { virtual = "." }
|
|
default-groups = []
|
|
dependencies = [
|
|
{ name = "a2wsgi" },
|
|
{ name = "aiofiles" },
|
|
{ name = "alembic" },
|
|
{ name = "apispec" },
|
|
{ name = "babel" },
|
|
{ name = "bdbag" },
|
|
{ name = "beaker" },
|
|
{ name = "bioblend" },
|
|
{ name = "bleach" },
|
|
{ name = "boltons" },
|
|
{ name = "boto" },
|
|
{ name = "bx-python" },
|
|
{ name = "celery" },
|
|
{ name = "circus" },
|
|
{ name = "cloudauthz" },
|
|
{ name = "conda-package-streaming" },
|
|
{ name = "ct3" },
|
|
{ name = "cwl-utils" },
|
|
{ name = "cwltool" },
|
|
{ name = "dictobj" },
|
|
{ name = "dnspython", version = "2.8.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.11'" },
|
|
{ name = "dnspython", version = "2.9.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.11'" },
|
|
{ name = "docutils", version = "0.21.2", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.11'" },
|
|
{ name = "docutils", version = "0.22.4", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.11'" },
|
|
{ name = "dparse" },
|
|
{ name = "edam-ontology" },
|
|
{ name = "fastapi" },
|
|
{ name = "fastmcp" },
|
|
{ name = "fissix" },
|
|
{ name = "fs" },
|
|
{ name = "fsspec" },
|
|
{ name = "future" },
|
|
{ name = "gravity" },
|
|
{ name = "gunicorn" },
|
|
{ name = "gxformat2" },
|
|
{ name = "h5grove" },
|
|
{ name = "h5py" },
|
|
{ name = "httpx" },
|
|
{ name = "ijson" },
|
|
{ name = "importlib-resources", marker = "python_full_version < '3.12'" },
|
|
{ name = "isa-rwval" },
|
|
{ name = "isal", version = "1.8.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.15'" },
|
|
{ name = "isal", version = "1.8.0", source = { registry = "https://wheels.galaxyproject.org/simple" }, marker = "python_full_version >= '3.15'" },
|
|
{ name = "jinja2" },
|
|
{ name = "kombu" },
|
|
{ name = "lagom" },
|
|
{ name = "mako" },
|
|
{ name = "markdown", version = "3.10.3", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.11'" },
|
|
{ name = "markdown", version = "3.11", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.11'" },
|
|
{ name = "markupsafe" },
|
|
{ name = "mercurial" },
|
|
{ name = "more-itertools" },
|
|
{ name = "mrcfile" },
|
|
{ name = "msal" },
|
|
{ name = "nodejs-wheel" },
|
|
{ name = "numpy", version = "2.2.6", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.11'" },
|
|
{ name = "numpy", version = "2.4.6", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version == '3.11.*'" },
|
|
{ name = "numpy", version = "2.5.3", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.12'" },
|
|
{ name = "openpyxl" },
|
|
{ name = "packaging" },
|
|
{ name = "paramiko" },
|
|
{ name = "parsley" },
|
|
{ name = "paste" },
|
|
{ name = "pebble" },
|
|
{ name = "pillow" },
|
|
{ name = "pkg-resources-backport" },
|
|
{ name = "psutil" },
|
|
{ name = "pulsar-galaxy-lib" },
|
|
{ name = "pycryptodome" },
|
|
{ name = "pydantic", extra = ["email"] },
|
|
{ name = "pydantic-ai" },
|
|
{ name = "pydantic-extra-types" },
|
|
{ name = "pydicom" },
|
|
{ name = "pyjwt" },
|
|
{ name = "pykwalify" },
|
|
{ name = "pylibmagic" },
|
|
{ name = "pyparsing" },
|
|
{ name = "pypng" },
|
|
{ name = "pysam" },
|
|
{ name = "python-dateutil" },
|
|
{ name = "python-magic" },
|
|
{ name = "python-multipart" },
|
|
{ name = "python-slugify" },
|
|
{ name = "pyyaml" },
|
|
{ name = "quickjs-ng" },
|
|
{ name = "refgenconf" },
|
|
{ name = "regex" },
|
|
{ name = "requests" },
|
|
{ name = "rocrate" },
|
|
{ name = "routes" },
|
|
{ name = "s3fs" },
|
|
{ name = "schema-salad" },
|
|
{ name = "slowapi" },
|
|
{ name = "social-auth-core" },
|
|
{ name = "sortedcontainers" },
|
|
{ name = "sqlalchemy" },
|
|
{ name = "sqlparse" },
|
|
{ name = "starlette" },
|
|
{ name = "starlette-context" },
|
|
{ name = "svgwrite" },
|
|
{ name = "tifffile", version = "2025.5.10", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.11'" },
|
|
{ name = "tifffile", version = "2026.3.3", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version == '3.11.*'" },
|
|
{ name = "tifffile", version = "2026.9.20", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.12'" },
|
|
{ name = "tuspyserver" },
|
|
{ name = "typing-extensions" },
|
|
{ name = "uvicorn" },
|
|
{ name = "uvloop" },
|
|
{ name = "webob" },
|
|
{ name = "whoosh" },
|
|
{ name = "zipstream-new" },
|
|
]
|
|
|
|
[package.dev-dependencies]
|
|
dev = [
|
|
{ name = "aiocop" },
|
|
{ name = "ase" },
|
|
{ name = "axe-selenium-python", version = "2.1.6", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.12'" },
|
|
{ name = "axe-selenium-python", version = "3.0.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.12'" },
|
|
{ name = "black" },
|
|
{ name = "boto3" },
|
|
{ name = "cloudbridge" },
|
|
{ name = "codespell" },
|
|
{ name = "cwltest" },
|
|
{ name = "darker" },
|
|
{ name = "fluent-logger" },
|
|
{ name = "galaxy-release-util" },
|
|
{ name = "gcsfs" },
|
|
{ name = "hvac" },
|
|
{ name = "isort" },
|
|
{ name = "lxml", version = "6.1.2", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.15'" },
|
|
{ name = "lxml", version = "6.1.3", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.15'" },
|
|
{ name = "markdown-it-reporter" },
|
|
{ name = "myst-parser", version = "4.0.1", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.11'" },
|
|
{ name = "myst-parser", version = "5.1.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.11'" },
|
|
{ name = "onedatafilerestclient" },
|
|
{ name = "pkce" },
|
|
{ name = "playwright" },
|
|
{ name = "pyftpdlib" },
|
|
{ name = "pykube-ng" },
|
|
{ name = "pytest" },
|
|
{ name = "pytest-asyncio" },
|
|
{ name = "pytest-cov" },
|
|
{ name = "pytest-html" },
|
|
{ name = "pytest-httpserver" },
|
|
{ name = "pytest-json-report" },
|
|
{ name = "pytest-mock" },
|
|
{ name = "pytest-playwright" },
|
|
{ name = "pytest-postgresql" },
|
|
{ name = "pytest-shard" },
|
|
{ name = "python-irodsclient" },
|
|
{ name = "responses" },
|
|
{ name = "roc-validator" },
|
|
{ name = "rucio-clients" },
|
|
{ name = "selenium" },
|
|
{ name = "seletools" },
|
|
{ name = "sphinx", version = "8.1.3", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.11'" },
|
|
{ name = "sphinx", version = "9.0.4", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version == '3.11.*'" },
|
|
{ name = "sphinx", version = "9.1.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.12'" },
|
|
{ name = "sphinx-rtd-theme" },
|
|
{ name = "sphinxcontrib-mermaid" },
|
|
{ name = "statsd" },
|
|
{ name = "testfixtures", version = "8.3.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.11'" },
|
|
{ name = "testfixtures", version = "12.4.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.11'" },
|
|
{ name = "total-perspective-vortex" },
|
|
{ name = "tuspy" },
|
|
{ name = "watchdog" },
|
|
{ name = "werkzeug" },
|
|
]
|
|
test = [
|
|
{ name = "aiocop" },
|
|
{ name = "ase" },
|
|
{ name = "axe-selenium-python", version = "2.1.6", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.12'" },
|
|
{ name = "axe-selenium-python", version = "3.0.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.12'" },
|
|
{ name = "boto3" },
|
|
{ name = "cloudbridge" },
|
|
{ name = "cwltest" },
|
|
{ name = "fluent-logger" },
|
|
{ name = "gcsfs" },
|
|
{ name = "hvac" },
|
|
{ name = "lxml", version = "6.1.2", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.15'" },
|
|
{ name = "lxml", version = "6.1.3", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.15'" },
|
|
{ name = "onedatafilerestclient" },
|
|
{ name = "pkce" },
|
|
{ name = "playwright" },
|
|
{ name = "pyftpdlib" },
|
|
{ name = "pykube-ng" },
|
|
{ name = "pytest" },
|
|
{ name = "pytest-asyncio" },
|
|
{ name = "pytest-cov" },
|
|
{ name = "pytest-html" },
|
|
{ name = "pytest-httpserver" },
|
|
{ name = "pytest-json-report" },
|
|
{ name = "pytest-mock" },
|
|
{ name = "pytest-playwright" },
|
|
{ name = "pytest-postgresql" },
|
|
{ name = "pytest-shard" },
|
|
{ name = "python-irodsclient" },
|
|
{ name = "responses" },
|
|
{ name = "roc-validator" },
|
|
{ name = "rucio-clients" },
|
|
{ name = "selenium" },
|
|
{ name = "seletools" },
|
|
{ name = "statsd" },
|
|
{ name = "testfixtures", version = "8.3.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.11'" },
|
|
{ name = "testfixtures", version = "12.4.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.11'" },
|
|
{ name = "total-perspective-vortex" },
|
|
{ name = "tuspy" },
|
|
{ name = "watchdog" },
|
|
{ name = "werkzeug" },
|
|
]
|
|
typecheck = [
|
|
{ name = "boto3-stubs", extra = ["s3"] },
|
|
{ name = "lxml-stubs" },
|
|
{ name = "mypy" },
|
|
{ name = "pydantic" },
|
|
{ name = "types-bleach" },
|
|
{ name = "types-boto" },
|
|
{ name = "types-cachetools" },
|
|
{ name = "types-contextvars" },
|
|
{ name = "types-dataclasses" },
|
|
{ name = "types-docutils" },
|
|
{ name = "types-markdown" },
|
|
{ name = "types-paramiko" },
|
|
{ name = "types-protobuf" },
|
|
{ name = "types-python-dateutil" },
|
|
{ name = "types-python-slugify" },
|
|
{ name = "types-pyyaml" },
|
|
{ name = "types-requests" },
|
|
{ name = "types-setuptools" },
|
|
{ name = "types-six" },
|
|
{ name = "types-webob" },
|
|
]
|
|
|
|
[package.metadata]
|
|
requires-dist = [
|
|
{ name = "a2wsgi" },
|
|
{ name = "aiofiles" },
|
|
{ name = "alembic" },
|
|
{ name = "apispec" },
|
|
{ name = "babel" },
|
|
{ name = "bdbag", specifier = ">=1.6.3" },
|
|
{ name = "beaker" },
|
|
{ name = "bioblend" },
|
|
{ name = "bleach" },
|
|
{ name = "boltons" },
|
|
{ name = "boto" },
|
|
{ name = "bx-python" },
|
|
{ name = "celery", specifier = ">=5.4.0" },
|
|
{ name = "circus" },
|
|
{ name = "cloudauthz", specifier = "==0.6.0" },
|
|
{ name = "conda-package-streaming" },
|
|
{ name = "ct3", specifier = ">=3.3.3" },
|
|
{ name = "cwl-utils", specifier = ">=0.13,!=0.44" },
|
|
{ name = "cwltool", specifier = ">=3.1.20230624081518" },
|
|
{ name = "dictobj" },
|
|
{ name = "dnspython" },
|
|
{ name = "docutils", specifier = "!=0.17,!=0.17.1" },
|
|
{ name = "dparse" },
|
|
{ name = "edam-ontology" },
|
|
{ name = "fastapi", specifier = ">=0.137.2" },
|
|
{ name = "fastmcp", specifier = ">=2.13.0" },
|
|
{ name = "fissix" },
|
|
{ name = "fs" },
|
|
{ name = "fsspec", specifier = ">=2025.7.0" },
|
|
{ name = "future", specifier = ">=1.0.0" },
|
|
{ name = "gravity", specifier = ">=1.2.3" },
|
|
{ name = "gunicorn", specifier = "!=25.1.0" },
|
|
{ name = "gxformat2", specifier = ">=0.27.0" },
|
|
{ name = "h5grove", specifier = ">=1.2.1" },
|
|
{ name = "h5py", specifier = ">=3.12" },
|
|
{ name = "httpx" },
|
|
{ name = "ijson" },
|
|
{ name = "importlib-resources", marker = "python_full_version < '3.12'" },
|
|
{ name = "isa-rwval", specifier = ">=0.10.11" },
|
|
{ name = "isal", marker = "python_full_version == '3.14.*'", specifier = ">=1.8.0", index = "https://pypi.org/simple" },
|
|
{ name = "isal", marker = "python_full_version < '3.15'", specifier = ">=1.7.0", index = "https://pypi.org/simple" },
|
|
{ name = "isal", marker = "python_full_version >= '3.15'", specifier = ">=1.7.0" },
|
|
{ name = "isal", marker = "python_full_version >= '3.15'", specifier = ">=1.8.0" },
|
|
{ name = "jinja2" },
|
|
{ name = "kombu", specifier = ">=5.5.0" },
|
|
{ name = "lagom" },
|
|
{ name = "mako" },
|
|
{ name = "markdown" },
|
|
{ name = "markupsafe" },
|
|
{ name = "mercurial", specifier = ">=7.2" },
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