galaxy

chained_dyndest_rules

Add type annotations to job handling code

2025-10-25 13:52:24 +01:00

curated_workflows

Serve a real slice of the IWC catalog in the integration tests

2026-09-23 18:13:11 -04:00

delay_rules

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htcondor_fake

Drop support for Python 3.8

2026-06-25 15:12:05 +01:00

job_resource_rules

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mock_biotools_content/data

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objectstore

Merge branch 'release_26.1' into dev

2026-10-05 11:33:20 +02:00

objectstore_selection_rules

Add type annotations to job handling code

2025-10-25 13:52:24 +01:00

oidc

Merge branch 'release_26.1' into dev

2026-10-13 19:15:40 +02:00

panel_views_1

Exclude multiple_versions from test_global_filters_on_integrated_panel

2023-11-16 15:08:21 +01:00

resubmission_rules

Address review comments

2026-05-11 11:02:48 +05:30

test_visualization_plugins/jupyterlite/static

Remove currently unused param option

2026-01-27 19:43:03 +03:00

webdav

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__init__.py

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chained_dyndest_job_conf.xml

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conftest.py

Merge branch 'release_26.1' into dev

2026-09-30 08:48:07 +02:00

delay_job_conf.yml

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dockerized_job_conf.yml

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dummy_job_resource_parameters.xml

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embedded_pulsar_docker_job_conf.yml

Version metadata containers with the Galaxy runtime they execute

2026-09-23 17:29:44 +02:00

embedded_pulsar_job_conf.yml

Preserve external metadata handling on worker threads

2026-09-03 16:43:56 -04:00

embedded_pulsar_metadata_extended_job_conf.yml

Disable conda_auto_init in embedded_pulsar_metadata_extended_job_conf.yml

2023-11-21 17:44:37 +01:00

embedded_pulsar_metadata_job_conf.yml

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embedded_pulsar_none_job_conf.yml

Test Pulsar integration with default_file_action: none

2026-01-13 20:00:56 +01:00

embedded_pulsar_singularity_job_conf.yml

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embedded_pulsar_tpv_job_conf.yml

Update integration test job_conf syntax for TPV 3.2.0

2026-04-09 12:29:45 +01:00

fallback_container_resolver.yml

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file_sources_conf_remote_files.yml

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file_sources_conf_vault.yml

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file_sources_conf.yml

simplify webdav endpoint config

2026-04-22 18:15:26 +10:00

finishing_recovery_job_conf.yml

Test Pulsar FINISHING recovery across restarts

2026-09-14 10:19:16 -04:00

handler_template_job_conf.xml

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io_injection_job_conf.yml

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job_resource_error_recovery_job_conf.yml

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refgenie.yml

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resubmission_default_job_conf.yml

fix job resubmission integration test

2025-03-06 12:30:31 +01:00

resubmission_dynamic_job_conf.xml

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resubmission_dynamic_multiple_job_conf.yml

Convert chained-resubmission job conf fixture to YAML

2026-05-19 16:09:11 +05:30

resubmission_job_conf.yml

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resubmission_job_resource_parameters_conf.xml

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resubmission_pulsar_job_conf.xml

Lower pulsar transport_timeout param instead of extending wait

2025-03-17 10:21:43 +01:00

resubmission_runners.py

replace more imports, lets go all in

2026-05-19 19:19:02 +02:00

resubmission_small_memory_job_conf.xml

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resubmission_small_memory_resubmission_to_large_job_conf.xml

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resubmission_tool_detected_always_error_job_conf.xml

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resubmission_tool_detected_resubmit_job_conf.xml

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sets_tmp_dir_expression_job_conf.xml

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sets_tmp_dir_to_true_job_conf.xml

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simple_job_conf.xml

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singularity_job_conf.yml

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test_agents.py

Expose implicit_collection_jobs_id on job details API

2026-09-20 09:11:51 -04:00

test_apache_nginx_sendfile.py

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test_async_downloads.py

Use requires_new_history decorator instead of unregistered marker

2026-04-15 09:33:10 +02:00

test_celery_fetch_quota.py

Enforce storage quota for Celery-based data fetch jobs

2026-02-26 15:29:33 +01:00

test_celery_inspect_pydantic_args.py

Use pydantic-aware serializer for celery control replies

2026-09-12 15:52:54 +02:00

test_celery_tasks.py

Merge branch 'release_23.2' into dev

2024-01-18 12:23:00 +01:00

test_celery_user_concurrency_limit.py

Drop support for Python 3.8

2026-06-25 15:12:05 +01:00

test_celery_user_rate_limit.py

Code cleanups from pyupgrade

2025-07-31 11:17:22 +01:00

test_chained_dynamic_destinations.py

Use test_driver.mkdtemp systematically

2026-01-01 15:08:26 +01:00

test_cli_runners.py

Apply 2026 black style

2026-01-20 10:25:45 +00:00

test_coexecution.py

Move more setup code into handle_galaxy_config_kwds which has test_driver configured

2026-01-01 15:08:26 +01:00

test_config_options_users.py

Gate email and display name changes on the account settings

2026-09-28 20:35:01 +02:00

test_config_schema.py

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test_configuration_decode.py

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test_container_resolution.py

Move container resolution API tests to integration tests

2026-09-24 09:34:32 +02:00

test_container_resolvers.py

Drop support for Python 3.8

2026-06-25 15:12:05 +01:00

test_containerized_jobs.py

Resolve the Galaxy root lazily in the containerized jobs test

2026-09-26 12:26:40 -04:00

test_credentials.py

Fix full lint and mypy checks

2026-07-28 17:28:36 +02:00

test_curated_workflows.py

Share the raw annotation write between curated suites

2026-09-29 13:28:47 -04:00

test_data_manager_bundle_chaining.py

Make user bundle lookup work on sqlite and drop the postgres skip

2026-09-18 18:39:10 +02:00

test_data_manager_refgenie.py

Remove the refgenie rows created by each integration test

2026-07-28 17:29:10 +02:00

test_data_manager_workflow_bundle.py

Address cached toolbox review feedback

2026-07-28 17:29:08 +02:00

test_data_manager.py

Move skip_if_toolshed_down to unittest_utils; document local skip decorators

2026-10-08 07:54:42 -04:00

test_dataset_copy_metadata_files.py

Fix copying metadata to copied job outputs

2023-11-10 18:03:45 +01:00

test_dataset_hashing.py

Drop support for Python 3.8

2026-06-25 15:12:05 +01:00

test_datatype_upload.py

Rename test helper classes that pytest tries to collect

2026-04-14 15:51:19 +02:00

test_default_permissions.py

Move public derived-permissions collection test to integration suite

2026-10-13 15:43:53 +02:00

test_deferred_directory_materialization.py

Share the test HTTP directory server and Zarr test stores

2026-10-13 10:23:37 +02:00

test_drs_compact_identifiers.py

Add DRS compact identifier support

2026-01-27 08:46:10 -05:00

test_dynamic_edam_loading.py

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test_edam_toolbox.py

Address cached toolbox review feedback

2026-07-28 17:29:08 +02:00

test_entry_point_sse.py

Add shared id-decode helpers to IntegrationInstance

2026-04-28 18:07:48 +02:00

test_error_report.py

tool error integration test

2024-04-11 10:09:05 -04:00

test_event_loop_blocking.py

Drop support for Python 3.8

2026-06-25 15:12:05 +01:00

test_expression_evaluation_isolation.py

Fix JavaScript sandbox escapes and upload path traversal in 24.0

2026-09-16 16:17:04 +02:00

test_extended_metadata_mapping.py

Numerous fixes for tool input format "21.01" parameters.

2024-10-30 10:52:08 -04:00

test_extended_metadata_outputs_to_working_directory.py

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test_extended_metadata.py

Merge pull request #23984 from davelopez/fix_remote_tool_eval_errors

2026-10-14 09:57:51 -04:00

test_fail_job_tool_unavailable.py

Simplify gxformat2 contract - drop ImporterGalaxyInterface, convert_and_import_workflow

2026-03-24 12:17:06 -04:00

test_flush_per_n_datasets.py

Rename classes derived from `IntegrationInstance` which are not test cases

2024-02-16 10:53:04 +00:00

test_galaxy_interactor.py

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test_genomes.py

Drop support for Python 3.8

2025-02-25 19:20:46 +00:00

test_handler_assignment_methods.py

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test_hashicorp_vault.py

Drop support for Python 3.8

2026-06-25 15:12:05 +01:00

test_history_archiving.py

Drop support for Python 3.8

2026-06-25 15:12:05 +01:00

test_history_import_export.py

Type annotation fixes for mypy 1.16.0

2025-06-10 02:22:18 +01:00

test_history_sse.py

Merge branch 'release_26.1' into dev

2026-09-23 18:43:01 +02:00

test_htcondor_runner.py

Test Pulsar FINISHING recovery across restarts

2026-09-14 10:19:16 -04:00

test_interactivetools_api.py

Share the Kubernetes PV/PVC setup between integration test classes

2026-09-03 14:59:40 -04:00

test_job_cache.py

Refactor to decrease duplication

2026-01-09 11:44:41 +01:00

test_job_environments.py

Use test_driver.mkdtemp systematically

2026-01-01 15:08:26 +01:00

test_job_files_remote_transfer.py

Test embedded Pulsar posting outputs via job files API

2026-10-03 08:16:40 -04:00

test_job_files_tus.py

Test embedded Pulsar posting outputs via job files API

2026-10-03 08:16:40 -04:00

test_job_files.py

Keep job files tus_hooks, handle disconnects and test auth ordering

2026-10-08 07:54:35 -04:00

test_job_outputs_to_working_directory.py

Test `from_work_dir="dir"` feature

2025-10-01 09:01:31 +02:00

test_job_recovery.py

Keep FINISHING state job-only

2026-09-14 10:19:16 -04:00

test_job_resource_error_recovery.py

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test_job_resubmission.py

Merge pull request #19748 from bernt-matthias/fix-resubmission-integration-test

2026-09-17 15:46:03 -04:00

test_kubernetes_runner.py

Share the Kubernetes PV/PVC setup between integration test classes

2026-09-03 14:59:40 -04:00

test_landing_requests.py

Drop support for Python 3.8

2026-06-25 15:12:05 +01:00

test_legacy_store_by.py

Rename classes derived from `IntegrationInstance` which are not test cases

2024-02-16 10:53:04 +00:00

test_live_evals.py

Drop the dead lgtm comments.

2026-05-20 11:08:33 -04:00

test_local_job_cancellation.py

Expose intentional job stop as a job manager method

2026-09-22 15:41:58 +02:00

test_materialize_dataset_instance_tasks.py

Rename the mock HTTP server to test_http_server

2026-09-22 19:16:35 +02:00

test_max_discovered_files.py

Apply max_discovered_files to collection operation tools that multiply inputs

2026-10-01 19:59:51 +02:00

test_mcp_endpoint.py

Use ordinary ASGI routes for the MCP endpoint

2026-09-16 21:59:20 +02:00

test_metadata_containerized.py

Fail explicitly when requested metadata containers cannot be resolved

2026-09-23 17:40:19 +02:00

test_metadata_strategy.py

Preserve external metadata handling on worker threads

2026-09-03 16:43:56 -04:00

test_model_store_scripts.py

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test_notification_sse.py

Drop support for Python 3.8

2026-06-25 15:12:05 +01:00

test_notifications.py

Drop support for Python 3.8

2026-06-25 15:12:05 +01:00

test_numeric_history_id.py

drop stray print

2026-09-24 08:59:42 +02:00

test_page_revision_json_encoding.py

Apply 2026 black style

2026-01-20 10:25:45 +00:00

test_panel_views.py

Address cached toolbox review feedback

2026-07-28 17:29:08 +02:00

test_plugins.py

Read the plugin chat proxy's temperature, top_p, max_tokens and timeout from inference_services, keeping the current values as defaults.

2026-10-11 17:19:20 +03:00

test_prefix_handling.py

Drop support for Python 3.8

2026-06-25 15:12:05 +01:00

test_pulsar_embedded_containers.py

Fix containerized metadata packaging and CI failures

2026-09-23 17:29:40 +02:00

test_pulsar_embedded_copy_working.py

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test_pulsar_embedded_extended_metadata.py

Test sessionless tag creation

2025-09-19 15:44:48 +02:00

test_pulsar_embedded_mq.py

Fix uploads in pulsar embedded test case

2025-02-26 14:55:08 +01:00

test_pulsar_embedded_none.py

Test Pulsar integration with default_file_action: none

2026-01-13 20:00:56 +01:00

test_pulsar_embedded_relay.py

Pulsar relay implementation

2025-11-28 11:12:12 +01:00

test_pulsar_embedded_remote_metadata.py

Keep Pulsar metadata containers confined to staged job files

2026-09-23 17:29:43 +02:00

test_pulsar_embedded.py

Tighten Pulsar version metric tests

2026-10-08 19:06:52 -04:00

test_purge_datasets.py

Drop support for Python 3.8

2026-06-25 15:12:05 +01:00

test_quota.py

Allow clearing quota descriptions

2026-09-26 20:22:55 +02:00

test_recalculate_user_disk_usage.py

Wait for quota update after purge in disk usage integration tests

2026-09-25 15:24:31 +02:00

test_remote_files_histories.py

Update to black 2024 stable style

2024-01-30 18:09:51 +00:00

test_remote_files_posix.py

Don't consume the user's files when staging composite uploads.

2026-09-25 14:27:10 -04:00

test_remote_files.py

Update tests for private-by-default datasets

2026-10-08 10:52:34 +02:00

test_repository_dependency_cache.py

Assert cached failures preserve repository files

2026-09-10 16:52:27 -04:00

test_repository_operations.py

Address cached toolbox review feedback

2026-07-28 17:29:08 +02:00

test_requested_uuids.py

Let only Galaxy choose a dataset's uuid

2026-10-01 16:38:16 +05:30

test_resolvers.py

Use test_driver.mkdtemp systematically

2026-01-01 15:08:26 +01:00

test_save_job_id_on_datasets.py

Removed deprecated `current` attribute of scoped_session

2025-02-21 09:29:41 +00:00

test_scripts_pgcleanup.py

Merge branch 'release_26.0' into release_26.1

2026-07-06 15:49:42 +02:00

test_scripts.py

Add integration tests for pgcleanup with user object stores

2026-06-08 12:41:25 +02:00

test_shed_tool_tests.py

Move skip_if_toolshed_down to unittest_utils; document local skip decorators

2026-10-08 07:54:42 -04:00

test_storage_cleaner.py

Drop support for Python 3.8

2026-06-25 15:12:05 +01:00

test_structured_dataset.py

Bound memory use in h5grove structured content endpoint

2026-07-09 19:17:31 +02:00

test_structured_like_unpopulated.py

Rename test tool to describe shape, not test scenario

2026-05-19 19:50:56 +02:00

test_subdomain_switcher_configuration.py

Add config-driven Galaxy subdomain switcher

2026-08-27 10:38:41 +02:00

test_tool_data_bundles.py

Match renamed data_manager output in bundle integration test

2026-06-17 19:29:03 +02:00

test_tool_data_delete.py

Use test_driver.mkdtemp systematically

2026-01-01 15:08:26 +01:00

test_tool_installation_request_form.py

Check that another user keeps their own rate-limit quota

2026-10-02 14:19:22 +02:00

test_tool_source_storage.py

Tighten cached toolbox attribute contracts

2026-07-28 17:29:09 +02:00

test_tool_submission_errors.py

Serialize message exceptions on execution error

2025-01-30 09:43:55 +01:00

test_upload_configuration_options.py

Drop support for Python 3.8

2026-06-25 15:12:05 +01:00

test_user_defined_tool_job_conf.py

Address cached toolbox review feedback

2026-07-28 17:29:08 +02:00

test_user_defined_tool_loading.py

Drop validators user-defined tools no longer support when lifting

2026-10-01 12:28:52 +02:00

test_user_preferences.py

Use (also) case-insensitive comparison for user email

2026-02-19 14:40:02 +00:00

test_users.py

Mint a new activation token when the email changes

2026-09-28 20:35:01 +02:00

test_vault_extra_prefs.py

Remove extra preferences when purging a user

2026-09-28 08:41:15 +02:00

test_vault_file_source.py

Use test_driver.mkdtemp systematically

2026-01-01 15:08:26 +01:00

test_web_framework_config.py

Allow CORS requests to api/workflow_landings

2024-10-10 09:40:28 +02:00

test_webdav.py

migrate webdav to fsspec

2026-04-14 16:37:27 +10:00

test_work_queue_put_failure.py

…

test_workflow_completion_hooks.py

Drop redundant completion hook test, improve remaining test

2026-01-21 14:44:55 +01:00

test_workflow_handler_configuration.py

Match IdEncodingHelper call sites to its argument and return types

2026-09-25 15:45:01 +02:00

test_workflow_invocation.py

Address cached toolbox review feedback

2026-07-28 17:29:08 +02:00

test_workflow_refactoring.py

Keep detached subworkflow steps out of the session

2026-10-05 19:39:28 -04:00

test_workflow_scheduling_options.py

Pass a raw text parameter in workflow scheduling integration fixture

2026-10-03 18:15:22 +02:00

test_workflow_sync.py

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test_workflow_tasks.py

Merge branch 'release_25.1' into release_26.0

2026-10-11 06:01:53 +02:00

user_preferences_extra_conf.yml

Replace the extra preferences form inputs with typed values

2026-09-28 08:41:14 +02:00

workflow_handler_configuration_job_conf.xml

…