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Greg Von Kuster
38 lines
4.4 KiB
Plaintext
Executable File
38 lines
4.4 KiB
Plaintext
Executable File
#This is a sample file distributed with Galaxy that enables tools
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#to retrieve microbial data via a URL .
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#
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#ORG campJeju_RM1221_1 Campylobacter jejuni RM1221 bacteria Epsilonproteobacteria chr http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=303 UCSC
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#CHR campJeju_RM1221_1 chr Campylobacter jejuni RM1221, complete genome 1777831 57236892 None http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NC_003912
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#DATA campJeju_RM1221_1_chr_CDS campJeju_RM1221_1 chr CDS bed /depot/data2/galaxy/microbes/campJeju_RM1221_1/chr.CDS.bed
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#DATA campJeju_RM1221_1_chr_tRNA campJeju_RM1221_1 chr tRNA bed /depot/data2/galaxy/microbes/campJeju_RM1221_1/chr.tRNA.bed
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#DATA campJeju_RM1221_1_chr_rRNA campJeju_RM1221_1 chr rRNA bed /depot/data2/galaxy/microbes/campJeju_RM1221_1/chr.rRNA.bed
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#DATA campJeju_RM1221_1_chr_seq campJeju_RM1221_1 chr sequence fasta /depot/data2/galaxy/microbes/campJeju_RM1221_1/chr.fna
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#DATA campJeju_RM1221_1_chr_GeneMark campJeju_RM1221_1 chr GeneMark bed /depot/data2/galaxy/microbes/campJeju_RM1221_1/chr.GeneMark.bed
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#DATA campJeju_RM1221_1_chr_GeneMarkHMM campJeju_RM1221_1 chr GeneMarkHMM bed /depot/data2/galaxy/microbes/campJeju_RM1221_1/chr.GeneMarkHMM.bed
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#DATA campJeju_RM1221_1_chr_Glimmer3 campJeju_RM1221_1 chr Glimmer3 bed /depot/data2/galaxy/microbes/campJeju_RM1221_1/chr.Glimmer3.bed
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#ORG 12521 Clostridium perfringens SM101 bacteria Firmicutes NC_008262,NC_008263,NC_008264,NC_008265 http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=12521 None
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#CHR 12521 NC_008265 Clostridium perfringens phage phiSM101, complete genome 38092 110804020 None http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NC_008265
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#DATA 12521_NC_008265_CDS 12521 NC_008265 CDS bed /depot/data2/galaxy/microbes/12521/NC_008265.CDS.bed
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#DATA 12521_NC_008265_tRNA 12521 NC_008265 tRNA bed /depot/data2/galaxy/microbes/12521/NC_008265.tRNA.bed
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#DATA 12521_NC_008265_rRNA 12521 NC_008265 rRNA bed /depot/data2/galaxy/microbes/12521/NC_008265.rRNA.bed
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#DATA 12521_NC_008265_seq 12521 NC_008265 sequence fasta /depot/data2/galaxy/microbes/12521/NC_008265.fna
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#DATA 12521_NC_008265_GeneMark 12521 NC_008265 GeneMark bed /depot/data2/galaxy/microbes/12521/NC_008265.GeneMark.bed
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#DATA 12521_NC_008265_GeneMarkHMM 12521 NC_008265 GeneMarkHMM bed /depot/data2/galaxy/microbes/12521/NC_008265.GeneMarkHMM.bed
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#DATA 12521_NC_008265_Glimmer3 12521 NC_008265 Glimmer3 bed /depot/data2/galaxy/microbes/12521/NC_008265.Glimmer3.bed
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#CHR 12521 NC_008264 Clostridium perfringens SM101 plasmid 2, complete sequence 12206 110804009 None http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NC_008264
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#DATA 12521_NC_008264_CDS 12521 NC_008264 CDS bed /depot/data2/galaxy/microbes/12521/NC_008264.CDS.bed
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#DATA 12521_NC_008264_tRNA 12521 NC_008264 tRNA bed /depot/data2/galaxy/microbes/12521/NC_008264.tRNA.bed
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#DATA 12521_NC_008264_rRNA 12521 NC_008264 rRNA bed /depot/data2/galaxy/microbes/12521/NC_008264.rRNA.bed
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#DATA 12521_NC_008264_seq 12521 NC_008264 sequence fasta /depot/data2/galaxy/microbes/12521/NC_008264.fna
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#DATA 12521_NC_008264_GeneMark 12521 NC_008264 GeneMark bed /depot/data2/galaxy/microbes/12521/NC_008264.GeneMark.bed
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#DATA 12521_NC_008264_GeneMarkHMM 12521 NC_008264 GeneMarkHMM bed /depot/data2/galaxy/microbes/12521/NC_008264.GeneMarkHMM.bed
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#DATA 12521_NC_008264_Glimmer3 12521 NC_008264 Glimmer3 bed /depot/data2/galaxy/microbes/12521/NC_008264.Glimmer3.bed
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#CHR 12521 NC_008263 Clostridium perfringens SM101 plasmid 1, complete sequence 12397 110803998 None http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NC_008263
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#DATA 12521_NC_008263_CDS 12521 NC_008263 CDS bed /depot/data2/galaxy/microbes/12521/NC_008263.CDS.bed
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#DATA 12521_NC_008263_tRNA 12521 NC_008263 tRNA bed /depot/data2/galaxy/microbes/12521/NC_008263.tRNA.bed
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#DATA 12521_NC_008263_rRNA 12521 NC_008263 rRNA bed /depot/data2/galaxy/microbes/12521/NC_008263.rRNA.bed
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#DATA 12521_NC_008263_seq 12521 NC_008263 sequence fasta /depot/data2/galaxy/microbes/12521/NC_008263.fna
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#DATA 12521_NC_008263_GeneMark 12521 NC_008263 GeneMark bed /depot/data2/galaxy/microbes/12521/NC_008263.GeneMark.bed
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#DATA 12521_NC_008263_GeneMarkHMM 12521 NC_008263 GeneMarkHMM bed /depot/data2/galaxy/microbes/12521/NC_008263.GeneMarkHMM.bed
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#DATA 12521_NC_008263_Glimmer3 12521 NC_008263 Glimmer3 bed /depot/data2/galaxy/microbes/12521/NC_008263.Glimmer3.bed
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