James Taylor e2ae2c4a75 Requirements tags for some samtools tools

2010-09-26 18:06:01 -04:00

..

bam_to_sam.py

Added BAM-to-SAM tool

2010-09-01 09:44:12 -04:00

bam_to_sam.xml

Requirements tags for some samtools tools

2010-09-26 18:06:01 -04:00

pileup_interval.py

Sync hashbangs

2010-04-01 20:36:31 -04:00

pileup_interval.xml

Requirements tags for some samtools tools

2010-09-26 18:06:01 -04:00

pileup_parser.pl

Fixed indel calling in pileup wrapper. TO DO: Write a separate wrapper for indels only.

2010-04-14 13:52:35 -04:00

pileup_parser.xml

changes to help text

2010-04-15 11:10:57 -04:00

sam2interval.py

Have sam2interval provide a (partial) header so that strand is automatically set in metadata.

2010-02-05 11:53:06 -05:00

sam2interval.xml

Create NGS peak calling section. Add MACS peak caller. Move GeneTrack to new section. Increment sam2interval tool version.

2010-02-05 16:06:27 -05:00

sam_bitwise_flag_filter.py

More SR changes

2009-09-21 10:32:48 -04:00

sam_bitwise_flag_filter.xml

fix some typos for tools in folders N-Z

2009-09-25 02:06:03 -04:00

sam_merge_code.py

Added samtools-based tools (sam_to_bam, sam_merge, sam_pileup) with their supporting files and modified Bam datatype so temp files are properly cleaned up

2009-08-28 15:59:16 -04:00

sam_merge.py

Updated NGS tools' stderr handling to use file rather than pipe to allow for large stderr output

2010-04-12 15:56:13 -04:00

sam_merge.xml

Requirements tags for some samtools tools

2010-09-26 18:06:01 -04:00

sam_pileup.py

Updated NGS tools' stderr handling to use file rather than pipe to allow for large stderr output

2010-04-12 15:56:13 -04:00

sam_pileup.xml

Requirements tags for some samtools tools

2010-09-26 18:06:01 -04:00

sam_to_bam.py

Change the way size of output file determined in Bowtie and SAM-to_BAM to deal with memory limitation.

2010-04-30 15:27:41 -04:00

sam_to_bam.xml

Requirements tags for some samtools tools

2010-09-26 18:06:01 -04:00