mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-21 13:50:20 +08:00
Nate Coraor
7560751dc8
Whether running locally or via PBS, $PATH should now be handled in your user's environment. This also fixes problems like PYTHONPATH on the new blast nodes being wrong (because they are x86_64 and the frontends are i686). Note that you can actually start Galaxy without having an eggs dir now.
37 lines
1.0 KiB
Python
37 lines
1.0 KiB
Python
"""
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usage: scramble.py [egg_name]
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With no arguments, scrambles all eggs necessary according to the
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settings in universe_wsgi.ini.
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egg_name - Scramble only this egg (as defined in eggs.ini) or 'all'
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for all eggs (even those not required by your settings).
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"""
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import os, sys, logging
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root = logging.getLogger()
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root.setLevel( 10 )
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root.addHandler( logging.StreamHandler( sys.stdout ) )
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lib = os.path.abspath( os.path.join( os.path.dirname( __file__ ), "..", "lib" ) )
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sys.path.append( lib )
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from galaxy.eggs import Crate, GalaxyConfig
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c = Crate()
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c.parse()
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if len( sys.argv ) == 1:
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galaxy_config = GalaxyConfig()
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ignore = []
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for name in c.get_names():
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if not galaxy_config.check_conditional( name ):
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ignore.append( name )
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c.scramble( ignore=ignore )
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else:
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if sys.argv[1] == 'all':
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c.scramble()
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else:
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egg = c.get( sys.argv[1] )
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if egg is None:
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print "error: %s not in eggs.ini" % sys.argv[1]
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sys.exit( 1 )
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egg.scramble()
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