Greg Von Kuster e54be223b2 Better way to skip invalid comment lines in filtering tool. Better numerical value checks in interval.py.

2007-12-18 14:52:04 +00:00

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aggregate_binned_scores_in_intervals.xml

Modified tools using the <select_options> tag approach for dynamic options to use the new <select> tag approach. I modified the microbial import tool to use the older <select_options> approach last week and will modify it to use the new <select> approach next week. A few tools still use the oldest dynamic_options attribute approach, but modifying them to use the new <select> tag will be trivial. I'll do this when I return.

2007-11-21 18:48:37 +00:00

aggregate_scores_in_intervals.py

Better error condition handling for some tools. I've made these changes because anything printed to stderr now results in the tool state being "error" and tools with this state are no longer allowed as input datasets for tools.

2007-12-12 19:30:26 +00:00

column_maker.py

Better error condition handling for some tools. I've made these changes because anything printed to stderr now results in the tool state being "error" and tools with this state are no longer allowed as input datasets for tools.

2007-12-12 19:30:26 +00:00

column_maker.xml

interface and help edits for text manipulation tools

2007-07-31 21:24:24 +00:00

cor.py

Better error condition handling for some tools. I've made these changes because anything printed to stderr now results in the tool state being "error" and tools with this state are no longer allowed as input datasets for tools.

2007-12-12 19:30:26 +00:00

cor.xml

More ColumnListParameter cleanup. Eliminated dynamic options from some tools by using ColumnListParameter.

2007-10-18 17:29:47 +00:00

correlation.pl

Moving james-wsgi branch to new trunk.

2006-11-15 16:28:21 +00:00

correlation.xml

Moving james-wsgi branch to new trunk.

2006-11-15 16:28:21 +00:00

filtering.py

Better way to skip invalid comment lines in filtering tool. Better numerical value checks in interval.py.

2007-12-18 14:52:04 +00:00

filtering.xml

More functional test cleanup, eliminated redundant tests, unused test data, and renamed some test data files.

2007-10-04 14:14:15 +00:00

grouping.py

Better error condition handling for some tools. I've made these changes because anything printed to stderr now results in the tool state being "error" and tools with this state are no longer allowed as input datasets for tools.

2007-12-12 19:30:26 +00:00

grouping.xml

More ColumnListParameter cleanup. Eliminated dynamic options from some tools by using ColumnListParameter.

2007-10-18 17:29:47 +00:00

gsummary.py

Better error condition handling for some tools. I've made these changes because anything printed to stderr now results in the tool state being "error" and tools with this state are no longer allowed as input datasets for tools.

2007-12-12 19:30:26 +00:00

gsummary.xml

Fixes and cleanup to summary statistics tool and commented out tests for grouping tool since they require mouse clicks (not handled by twill).

2007-08-20 20:33:15 +00:00

gsummary.xml.groups

Changing all tools that use 'text' as file extension to now use 'txt'. We are eliminating the use of 'text' as a file extension within Galaxy and will now use only 'txt' for Text data types.

2007-09-27 12:24:27 +00:00

wiggle_to_simple.py

A fix for the UCSCOutWrapper class resulting in a better exception handler for wiggle_to_simple.

2007-12-12 20:01:26 +00:00

wiggle_to_simple.xml

Enhancements / fixes to new approach to generating dynamic options. Fixes to aggregate scores and wiggle to simple tools. All functional tests should now pass.

2007-10-26 12:38:56 +00:00