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48 lines
1.5 KiB
XML
48 lines
1.5 KiB
XML
<tool id="EMBOSS_polydot77" name="polydot">
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<!-- produces png file, not added functional tests -->
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<description>Displays all-against-all dotplots of a set of sequences</description>
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<command interpreter="perl">emboss_single_outputfile_wrapper.pl polydot -sequence $input1 -graph png -goutfile $output2 -outfeat $output1 -wordsize $wordsize -boxit $boxit -dumpfeat yes -gap
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$gap -auto</command>
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<inputs>
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<param format="fasta" name="input1" type="data">
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<label>Sequence</label>
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</param>
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<param name="wordsize" size="10" type="text" value="6">
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<label>Word size</label>
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</param>
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<param name="boxit" type="select">
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<label>Draw a box around each dotplot</label>
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<option value="yes">Yes</option>
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<option value="no">No</option>
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</param>
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<param name="gap" size="10" type="text" value="10">
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<label>Size of gap</label>
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</param>
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</inputs>
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<outputs>
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<data format="polydot" name="output1" />
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<data format="png" name="output2" />
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</outputs>
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<!-- <tests>
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<test>
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<param name="input1" value="2.fasta"/>
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<param name="wordsize" value="6"/>
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<param name="boxit" value="yes"/>
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<param name="gap" value="10"/>
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<output name="output1" file="emboss_polydot_out.png"/>
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</test>
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</tests>-->
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<help>
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.. class:: warningmark
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The input dataset needs to be sequences.
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-----
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You can view the original documentation here_.
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.. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/polydot.html
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</help>
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</tool>
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