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37 lines
1.4 KiB
XML
37 lines
1.4 KiB
XML
<tool id="EMBOSS_octanol63" name="octanol">
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<!-- graphics output with filename, no functional tests added -->
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<description>Displays protein hydropathy</description>
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<command interpreter="perl">emboss_single_outputfile_wrapper.pl octanol -sequence $input1 -graph png -goutfile $out_file1 -width $width -octanolplot $octanolplot -interfaceplot $interfaceplot
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-differenceplot $differenceplot -auto</command>
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<inputs>
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<param format="data" name="input1" type="data">
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<label>Sequences</label>
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</param>
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<param name="width" size="4" type="text" value="19">
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<label>Window size</label>
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</param>
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<param name="octanolplot" type="select">
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<label>Display the octanol plot</label>
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<option value="no">No</option>
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<option value="yes">Yes</option>
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</param>
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<param name="interfaceplot" type="select">
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<label>Display the interface plot</label>
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<option value="no">No</option>
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<option value="yes">Yes</option>
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</param>
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<param name="differenceplot" type="select">
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<label>Display the difference plot</label>
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<option value="yes">Yes</option>
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<option value="no">No</option>
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</param>
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</inputs>
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<outputs>
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<data format="png" name="out_file1" />
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</outputs>
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<help>
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You can view the original documentation here_.
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.. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/octanol.html
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</help>
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</tool> |