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35 lines
1.2 KiB
XML
35 lines
1.2 KiB
XML
<tool id="EMBOSS_freak36" name="freak">
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<description>Residue/base frequency table or plot</description>
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<command>freak -seqall $input1 -outfile $out_file1 -window $window -letters $letters -graph png -step $step -auto</command>
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<inputs>
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<param format="data" name="input1" type="data">
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<label>Sequences</label>
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</param>
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<param name="letters" size="5" type="text" value="gc">
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<label>Residue letters</label>
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</param>
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<param name="step" size="5" type="text" value="1">
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<label>Stepping value</label>
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</param>
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<param name="window" size="5" type="text" value="30">
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<label>Averaging window</label>
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</param>
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</inputs>
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<outputs>
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<data format="freak" name="out_file1" />
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</outputs>
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<tests>
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<test>
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<param name="input1" value="2.fasta"/>
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<param name="letters" value="gc"/>
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<param name="step" value="1"/>
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<param name="window" value="30"/>
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<output name="out_file1" file="emboss_freak_out.freak"/>
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</test>
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</tests>
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<help>
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You can view the original documentation here_.
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.. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/freak.html
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</help>
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</tool> |