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34 lines
1.3 KiB
XML
34 lines
1.3 KiB
XML
<tool id="EMBOSS: dotpath25" name="dotpath">
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<description>Non-overlapping wordmatch dotplot of two sequences</description>
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<command interpreter="perl">emboss_single_outputfile_wrapper.pl dotpath -asequence $input1 -bsequence $input2 -goutfile $out_file1 -wordsize $wordsize -overlaps $overlaps -boxit $boxit -graph png
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-auto</command>
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<inputs>
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<param format="data" name="input1" type="data">
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<label>Sequence 1</label>
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</param>
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<param format="data" name="input2" type="data">
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<label>Sequence 2</label>
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</param>
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<param name="wordsize" size="4" type="text" value="4">
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<label>Word size</label>
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</param>
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<param name="overlaps" type="select">
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<label>Display the overlapping matches (in red) as well as the minimal set of non-overlapping matches</label>
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<option value="no">No</option>
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<option value="yes">Yes</option>
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</param>
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<param name="boxit" type="select">
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<label>Draw a box around dotplot</label>
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<option value="yes">Yes</option>
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<option value="no">No</option>
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</param>
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</inputs>
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<outputs>
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<data format="png" name="out_file1" />
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</outputs>
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<help>
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You can view the original documentation here_.
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.. _here: http://emboss.sourceforge.net/apps/release/4.0/emboss/apps/dotpath.html
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</help>
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</tool> |