mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-24 16:30:27 +08:00
81 lines
3.4 KiB
Python
81 lines
3.4 KiB
Python
from base.twilltestcase import TwillTestCase
|
|
|
|
""" Tests are executed in order, sorted by name"""
|
|
|
|
class UploadData( TwillTestCase ):
|
|
|
|
def test_00_multi_upload( self ):
|
|
"""test_get_data.test_multi_upload: Testing multiple uploads"""
|
|
self.login()
|
|
self.upload_file('1.bed')
|
|
self.verify_dataset_correctness('1.bed')
|
|
self.upload_file('2.bed', dbkey='hg17')
|
|
self.verify_dataset_correctness('2.bed')
|
|
self.upload_file('3.bed', dbkey='hg17', ftype='bed')
|
|
self.verify_dataset_correctness('3.bed')
|
|
self.upload_file('4.bed.gz', dbkey='hg17', ftype='bed')
|
|
self.verify_dataset_correctness('4.bed')
|
|
self.upload_file('1.scf', ftype='scf')
|
|
self.verify_dataset_correctness('1.scf')
|
|
self.upload_file('1.scf.zip', ftype='binseq.zip')
|
|
self.verify_dataset_correctness('1.scf.zip')
|
|
self.delete_history_item( 1 )
|
|
self.delete_history_item( 2 )
|
|
self.delete_history_item( 3 )
|
|
self.delete_history_item( 4 )
|
|
self.delete_history_item( 5 )
|
|
self.delete_history_item( 6 )
|
|
def test_9999_clean_up( self ):
|
|
self.delete_history()
|
|
self.logout()
|
|
|
|
class GetEncodeData( TwillTestCase ):
|
|
|
|
def test_00_get_encode_data( self ):
|
|
"""test_get_data.test_get_encode_data"""
|
|
self.login()
|
|
self.run_tool('encode_import_chromatin_and_chromosomes1', hg17=['cc.EarlyRepSeg.20051216.bed'] )
|
|
#hg17=[ "cc.EarlyRepSeg.20051216.bed", "cc.EarlyRepSeg.20051216.gencode_partitioned.bed", "cc.LateRepSeg.20051216.bed", "cc.LateRepSeg.20051216.gencode_partitioned.bed", "cc.MidRepSeg.20051216.bed", "cc.MidRepSeg.20051216.gencode_partitioned.bed" ] )
|
|
self.wait()
|
|
self.verify_dataset_correctness('cc.EarlyRepSeg.20051216.bed', hid=1)
|
|
#self.verify_dataset_correctness('cc.EarlyRepSeg.20051216.gencode_partitioned.bed', hid=2)
|
|
#self.verify_dataset_correctness('cc.LateRepSeg.20051216.bed', hid=3)
|
|
#self.verify_dataset_correctness('cc.LateRepSeg.20051216.gencode_partitioned.bed', hid=4)
|
|
#self.verify_dataset_correctness('cc.MidRepSeg.20051216.bed', hid=5)
|
|
#self.verify_dataset_correctness('cc.MidRepSeg.20051216.gencode_partitioned.bed', hid=6)
|
|
self.run_tool('encode_import_gencode1', hg17=['gencode.CDS.20051206.bed'])
|
|
self.wait()
|
|
self.verify_dataset_correctness('sc_3D_cds.bed', hid=2)
|
|
self.delete_history_item( 1 )
|
|
self.delete_history_item( 2 )
|
|
def test_9999_clean_up( self ):
|
|
self.delete_history()
|
|
self.logout()
|
|
|
|
class DataSources( TwillTestCase ):
|
|
|
|
#def test_hbvar(self):
|
|
# """Getting hybrid gene mutations from HbVar"""
|
|
# #self.load_cookies("hbvar_cookie.txt")
|
|
# self.clear_history()
|
|
# self.run_tool('hbvar')
|
|
# params = dict(
|
|
# htyp="any hybrid gene",
|
|
# )
|
|
# self.submit_form(form=1, button="Submit Query", **params)
|
|
# params = dict(
|
|
# display_format="galaxy",
|
|
# )
|
|
# self.submit_form(form=1, button="Go", **params)
|
|
# params = dict(
|
|
# build="hg17",
|
|
# )
|
|
# self.submit_form(form=1, button="ok", **params);
|
|
# """
|
|
# TODO: Currently fails when using sqlite, although successful when
|
|
# using Postgres. Upgrading our version of sqlite may fix this, but
|
|
# confirmation is required.
|
|
# """
|
|
# self.verify_dataset_correctness('hbvar_hybrid_genes.dat')
|
|
pass
|