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galaxy/test/integration
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mvdbeek 15cf05a8a5 Add testcase for explicit output collection step_outputs when reaching max_num_jobs 
This should recapitulate the error seen when running workflow tests
against https://github.com/galaxyproject/iwc/pull/23.
2021-03-01 20:09:03 +01:00
..
chained_dyndest_rules
fix chained dynamic destinations integration test
2021-02-25 13:49:19 +01:00
cloudauthz
Minor test cleanup
2020-09-18 12:28:33 +02:00
delay_rules
Integration test for job recovery (before and after handler has picked it up).
2018-08-21 15:17:12 -04:00
objectstore
Merge remote-tracking branch 'upstream/release_20.05' into dev
2020-08-25 20:20:14 -04:00
objectstore_selection_rules
Allow configuring object stores on a per-job-destination basis.
2018-08-06 11:29:08 -04:00
resubmission_rules
Allow YAML configuration of job_conf.xml.
2019-05-07 08:23:30 -04:00
webdav
Pluggable URI handling across upload components.
2020-07-14 10:09:50 -04:00
__init__.py
…
chained_dyndest_job_conf.xml
Cleanup integration test configuration code.
2019-05-02 08:45:11 -04:00
conftest.py
Fixed import order
2020-04-07 13:51:25 -04:00
delay_job_conf.yml
add default to test job_conf
2019-05-08 11:55:13 -04:00
dockerized_job_conf.xml
Cleanup integration test configuration code.
2019-05-02 08:45:11 -04:00
embedded_pulsar_docker_job_conf.yml
Allow remote container port monitoring for ITs.
2020-02-19 09:53:10 -05:00
embedded_pulsar_job_conf.xml
Cleanup integration test configuration code.
2019-05-02 08:45:11 -04:00
embedded_pulsar_metadata_job_conf.yml
Allow setting metadata_strategy per destination
2020-07-04 19:20:53 +02:00
embedded_pulsar_singularity_job_conf.yml
Dockerized Pulsar tests.
2019-09-11 20:37:08 -04:00
file_sources_conf.yml
Pluggable URI handling across upload components.
2020-07-14 10:09:50 -04:00
handler_template_job_conf.xml
Integration tests for handler assignment methods
2019-01-04 16:46:29 -05:00
io_injection_job_conf.yml
Allow YAML configuration of job_conf.xml.
2019-05-07 08:23:30 -04:00
resubmission_default_job_conf.yml
Allow YAML configuration of job_conf.xml.
2019-05-07 08:23:30 -04:00
resubmission_dynamic_job_conf.xml
Allow YAML configuration of job_conf.xml.
2019-05-07 08:23:30 -04:00
resubmission_job_conf.yml
Allow YAML configuration of job_conf.xml.
2019-05-07 08:23:30 -04:00
resubmission_job_resource_parameters_conf.xml
Allow YAML configuration of job_conf.xml.
2019-05-07 08:23:30 -04:00
resubmission_pulsar_job_conf.xml
Cleanup integration test configuration code.
2019-05-02 08:45:11 -04:00
resubmission_runners.py
Implement a Galaxy config option for default job re-submission conditions.
2017-01-04 16:11:56 -05:00
resubmission_small_memory_job_conf.xml
Allow YAML configuration of job_conf.xml.
2019-05-07 08:23:30 -04:00
resubmission_small_memory_resubmission_to_large_job_conf.xml
Tool-centric annotation of out of memory errors.
2017-12-22 09:08:18 -05:00
resubmission_tool_detected_always_error_job_conf.xml
Fix resubmission on tool error detection.
2018-11-23 14:32:04 +01:00
resubmission_tool_detected_resubmit_job_conf.xml
Fix resubmission on tool error detection.
2018-11-23 14:32:04 +01:00
sets_tmp_dir_expression_job_conf.xml
Fix another integration test
2021-02-25 13:49:58 +01:00
sets_tmp_dir_to_true_job_conf.xml
Cleanup integration test configuration code.
2019-05-02 08:45:11 -04:00
simple_job_conf.xml
Fix failing integration test.
2019-05-03 08:38:33 -04:00
singularity_job_conf.xml
Cleanup integration test configuration code.
2019-05-02 08:45:11 -04:00
test_chained_dynamic_destinations.py
Move galaxy testing utilities into more sane package structure.
2019-11-12 09:03:06 -05:00
test_change_datatype_with_store_by_id.py
Move test_assign_column_pja to own class
2020-08-11 14:53:53 +02:00
test_cli_runners.py
Decorate class to skip, not class setup method
2020-01-09 14:40:48 +01:00
test_config_defaults.py
API + UI for importing workflows from a GA4GH TRS server.
2020-08-21 12:06:54 -04:00
test_config_options_users.py
Move galaxy testing utilities into more sane package structure.
2019-11-12 09:03:06 -05:00
test_config_schema.py
Move schema loading/validating code out of config
2020-03-02 15:55:29 -05:00
test_configuration_decode.py
Eliminate self.security from API tests (breaks abstractions).
2020-07-02 17:00:03 -04:00
test_containerized_jobs.py
Respect `use_shared_home="false"` when running tools in container
2020-09-29 17:48:13 +01:00
test_data_manager.py
Merge branch 'release_19.09' into merge_19.09
2019-11-19 00:17:15 +01:00
test_datatype_upload.py
Test clean up per code review feedback.
2020-04-21 12:58:44 -04:00
test_extended_metadata_mapping.py
Test case for collection mapping with extended metadata.
2020-05-15 09:46:58 -04:00
test_extended_metadata_outputs_to_working_directory.py
Run extended_metadata integration tests with outputs_to_working_directory as well
2019-11-14 12:20:48 +01:00
test_extended_metadata.py
add test tool to integration tests
2020-09-09 10:35:14 +02:00
test_fail_job_tool_unavailable.py
Fix test_fail_job_tool_unavailable.py for updated gxformat2 syntax.
2020-04-12 22:39:23 +01:00
test_handler_assignment_methods.py
Make str.join()s more efficient
2020-01-23 11:06:32 +00:00
test_history_import_export.py
fix MRO problems
2020-09-09 10:57:53 +02:00
test_interactivetools_api.py
Return to skipping Kubernetes staging tests on Github actions...
2020-04-23 12:12:51 -04:00
test_job_environments.py
Respect `use_shared_home="false"` when running tools in container
2020-09-29 17:48:13 +01:00
test_job_recovery.py
Move galaxy testing utilities into more sane package structure.
2019-11-12 09:03:06 -05:00
test_job_resubmission.py
Move galaxy testing utilities into more sane package structure.
2019-11-12 09:03:06 -05:00
test_kubernetes_runner.py
Also check for expected output in k8s delete test
2020-10-02 00:11:50 +05:30
test_kubernetes_staging.py
Drop use of removed config option
2020-06-20 18:16:30 +01:00
test_local_job_cancellation.py
Test case for stopping Pulsar Kubernetes job.
2020-04-23 12:12:50 -04:00
test_mules_as_job_handlers.py
Move galaxy testing utilities into more sane package structure.
2019-11-12 09:03:06 -05:00
test_page_revision_json_encoding.py
Implement Markdown pages w/editor toolbar.
2019-12-16 07:25:16 -05:00
test_pulsar_embedded_containers.py
Move galaxy testing utilities into more sane package structure.
2019-11-12 09:03:06 -05:00
test_pulsar_embedded_copy_working.py
test a tool with from_working_dir and pulsar
2019-12-13 22:58:32 +01:00
test_pulsar_embedded_metadata.py
Extend pulsar metadata testing to cover MetadataFile inputs
2020-07-09 12:11:21 +02:00
test_pulsar_embedded_mq.py
Integration test for embedded Pulsar in MQ mode.
2020-03-24 10:34:30 -04:00
test_pulsar_embedded.py
Move galaxy testing utilities into more sane package structure.
2019-11-12 09:03:06 -05:00
test_remote_files.py
Add infrastructure for writing to pluggable galaxy file sources.
2020-09-10 09:37:50 -04:00
test_repository_operations.py
Fix fastqc owner in test case
2020-04-21 16:06:08 +02:00
test_resolvers.py
Move galaxy testing utilities into more sane package structure.
2019-11-12 09:03:06 -05:00
test_scripts.py
Python3: unicodify the output of `subprocess.check_output()`
2020-02-05 12:13:39 +00:00
test_shed_tool_tests.py
Need to call configure_shed for persistent shed_tool_conf
2020-05-31 19:25:42 +02:00
test_upload_configuration_options.py
FTP Upload Selenium test.
2020-04-24 09:32:42 -04:00
test_webdav.py
Pluggable URI handling across upload components.
2020-07-14 10:09:50 -04:00
test_work_queue_put_failure.py
Move galaxy testing utilities into more sane package structure.
2019-11-12 09:03:06 -05:00
test_workflow_handler_configuration.py
Fix db-skip-locked invocation grabbing for pool members
2020-10-07 11:08:53 +02:00
test_workflow_scheduling_options.py
Add testcase for explicit output collection step_outputs when reaching max_num_jobs
2021-03-01 20:09:03 +01:00
test_workflow_sync.py
Move galaxy testing utilities into more sane package structure.
2019-11-12 09:03:06 -05:00
tool_sheds_conf.xml
py3: fix installing and running data managers
2018-08-14 14:56:06 +02:00
uses_shed.py
Remove ToolDependency objects before removing ToolShedRepository
2020-04-21 16:05:44 +02:00
workflow_handler_configuration_job_conf.xml
[17.01] Restrict workflow scheduling within a history to a fixed, random handler.
2017-03-29 22:20:41 -04:00