Daniel Blankenberg 591ee9a922 Import patch contributed by Assaf Gordon allowing bwa_wrapper to work directly on fastqillumina formatted files. Closes #635.

2011-08-08 09:35:48 -04:00

..

bfast_wrapper.py

Sam header suppression made optional in BFAST and default set to off for BFAST and Bowtie. Fixed dbkey setting on outputs for for BFAST, Bowtie, Mosaik. Fixed sorting of built-in builds for these tools so ordered by pretty name.

2011-05-09 12:11:54 -04:00

bfast_wrapper.xml

Sam header suppression made optional in BFAST and default set to off for BFAST and Bowtie. Fixed dbkey setting on outputs for for BFAST, Bowtie, Mosaik. Fixed sorting of built-in builds for these tools so ordered by pretty name.

2011-05-09 12:11:54 -04:00

bowtie_color_wrapper.xml

Sam header suppression made optional in BFAST and default set to off for BFAST and Bowtie. Fixed dbkey setting on outputs for for BFAST, Bowtie, Mosaik. Fixed sorting of built-in builds for these tools so ordered by pretty name.

2011-05-09 12:11:54 -04:00

bowtie_wrapper.py

Sam header suppression made optional in BFAST and default set to off for BFAST and Bowtie. Fixed dbkey setting on outputs for for BFAST, Bowtie, Mosaik. Fixed sorting of built-in builds for these tools so ordered by pretty name.

2011-05-09 12:11:54 -04:00

bowtie_wrapper.xml

Sam header suppression made optional in BFAST and default set to off for BFAST and Bowtie. Fixed dbkey setting on outputs for for BFAST, Bowtie, Mosaik. Fixed sorting of built-in builds for these tools so ordered by pretty name.

2011-05-09 12:11:54 -04:00

bwa_color_wrapper.xml

Make setting read groups in BWA off by default.

2011-08-04 13:30:01 -04:00

bwa_wrapper.py

Import patch contributed by Assaf Gordon allowing bwa_wrapper to work directly on fastqillumina formatted files. Closes #635.

2011-08-08 09:35:48 -04:00

bwa_wrapper.xml

Import patch contributed by Assaf Gordon allowing bwa_wrapper to work directly on fastqillumina formatted files. Closes #635.

2011-08-08 09:35:48 -04:00

fastq_statistics.xml

fix some typos for tools in folders N-Z

2009-09-25 02:06:03 -04:00

lastz_paired_reads_wrapper.py

Added version info to stdout for NGS tools

2010-11-24 12:35:49 -05:00

lastz_paired_reads_wrapper.xml

Corrected output labels to be in line with other tools for NGS tools: sam_to_bam, sam_merge, sam_pileup, bam_to_sam, PerM, bowtie_color_wrapper, bowtie_wrapper, bwa_wrapper, lastz_paired_reads_wrapper, lastz_wrapper, srma_wrapper

2011-01-12 13:31:04 -05:00

lastz_wrapper.py

Added version info to stdout for NGS tools

2010-11-24 12:35:49 -05:00

lastz_wrapper.xml

Typos

2011-02-25 13:35:27 -05:00

mosaik.xml

Sam header suppression made optional in BFAST and default set to off for BFAST and Bowtie. Fixed dbkey setting on outputs for for BFAST, Bowtie, Mosaik. Fixed sorting of built-in builds for these tools so ordered by pretty name.

2011-05-09 12:11:54 -04:00

PerM.xml

Corrected output labels to be in line with other tools for NGS tools: sam_to_bam, sam_merge, sam_pileup, bam_to_sam, PerM, bowtie_color_wrapper, bowtie_wrapper, bwa_wrapper, lastz_paired_reads_wrapper, lastz_wrapper, srma_wrapper

2011-01-12 13:31:04 -05:00

srma_wrapper.py

Updated SRMA to properly set dbkey and changed functional tests so that they can handle a single line difference for the SRMA version number tag

2011-05-11 10:49:32 -04:00

srma_wrapper.xml

Updated SRMA to properly set dbkey and changed functional tests so that they can handle a single line difference for the SRMA version number tag

2011-05-11 10:49:32 -04:00