Guruprasad Anada e78f34fb49 Modified help message for indel rate tool.

2008-10-06 09:33:52 -04:00

..

best_regression_subsets.py

Adding a new set of toolss to perform multiple linear regression analysis.

2008-09-20 18:14:24 -04:00

best_regression_subsets.xml

Adding a new set of toolss to perform multiple linear regression analysis.

2008-09-20 18:14:24 -04:00

featureCounter.py

Bug fixes, miscellaneous cleanup for flanking_features, windowSplitter, quality_filter, featureCounter, get_flanks.

2008-05-27 14:28:49 +00:00

featureCounter.xml

Completed an old FIXME in DefaultToolAction.execute() - metadata no longer added to "incoming". Tool config params changed from things like$input_chromCol to ${input.metadata.chromCol}.

2008-07-23 15:27:39 -04:00

getIndelRates_3way.py

Modified INDEL tools under Regional variation section.

2008-09-22 12:02:35 -04:00

getIndelRates_3way.xml

Modified help message for indel rate tool.

2008-10-06 09:33:52 -04:00

getIndels_2way.xml

Added tool dependencies to xml.

2008-04-25 19:40:16 +00:00

getIndels_3way.xml

Modified INDEL tools under Regional variation section.

2008-09-22 12:02:35 -04:00

getIndels.py

Separate framework and tool environments.

2008-04-11 20:11:21 +00:00

linear_regression.py

Adding a new set of toolss to perform multiple linear regression analysis.

2008-09-20 18:14:24 -04:00

linear_regression.xml

Adding a new set of toolss to perform multiple linear regression analysis.

2008-09-20 18:14:24 -04:00

maf_cpg_filter.py

Separate framework and tool environments.

2008-04-11 20:11:21 +00:00

maf_cpg_filter.xml

Added tool dependencies to xml.

2008-04-25 19:40:16 +00:00

microsats_alignment_level.py

Adding tools to fetch microsatellites and estimate their mutabilities.

2008-09-24 18:20:39 -04:00

microsats_alignment_level.xml

Adding tools to fetch microsatellites and estimate their mutabilities.

2008-09-24 18:20:39 -04:00

microsats_mutability.py

Adding tools to fetch microsatellites and estimate their mutabilities.

2008-09-24 18:20:39 -04:00

microsats_mutability.xml

Adding tools to fetch microsatellites and estimate their mutabilities.

2008-09-24 18:20:39 -04:00

parseMAF_smallIndels.pl

Modified INDEL tools under Regional variation section.

2008-09-22 12:02:35 -04:00

quality_filter.py

Bug fixes, miscellaneous cleanup for flanking_features, windowSplitter, quality_filter, featureCounter, get_flanks.

2008-05-27 14:28:49 +00:00

quality_filter.xml

Rewrite of dynamic options for select lists. There are no more 'special cases' and new filters are much easier to incorporate, as neeeded.

2008-05-29 17:38:46 +00:00

qv_to_bqv.py

Removed the remainder of the tool version subdirectories.

2008-03-03 18:38:57 +00:00

qv_to_bqv.xml

Eliminated all Python2.4 references, added necessary assert statements to ensure minimum version of Python 2.4.

2008-03-28 15:24:50 +00:00

rcve.py

Adding a new set of toolss to perform multiple linear regression analysis.

2008-09-20 18:14:24 -04:00

rcve.xml

Adding a new set of toolss to perform multiple linear regression analysis.

2008-09-20 18:14:24 -04:00

substitution_rates.py

Adding tools to compute Substitution rates.

2008-09-21 17:36:28 -04:00

substitution_rates.xml

Adding tools to compute Substitution rates.

2008-09-21 17:36:28 -04:00

substitutions.py

Adding tools to compute Substitution rates.

2008-09-21 17:36:28 -04:00

substitutions.xml

Adding tools to compute Substitution rates.

2008-09-21 17:36:28 -04:00

windowSplitter.py

Bug fixes, miscellaneous cleanup for flanking_features, windowSplitter, quality_filter, featureCounter, get_flanks.

2008-05-27 14:28:49 +00:00

windowSplitter.xml

Completed an old FIXME in DefaultToolAction.execute() - metadata no longer added to "incoming". Tool config params changed from things like$input_chromCol to ${input.metadata.chromCol}.

2008-07-23 15:27:39 -04:00